View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15157_low_20 (Length: 255)
Name: NF15157_low_20
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15157_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 21898894 - 21899128
Alignment:
| Q |
4 |
ccctgttgttctccacatgtttgtatatagaattttctttgaatgttgtataagcgttttgatttcaattatacactatttcgctttattatttggggga |
103 |
Q |
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| T |
21898894 |
ccctgttgttctccacatgtttgtatatagaattttctttgaatgttgtataagcgttttgatttcaataatacactatctcgctttattattagaggga |
21898993 |
T |
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| Q |
104 |
gcaaccatcatttttacatgtgttgttttcagacatcgtgtatattaagaagattacttaaacaattaacccttttttcaaaattatgggagtgacttgt |
203 |
Q |
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| T |
21898994 |
tcaaccgtcgtttttgcatgtgttgttttcagacatcgtgtatattactaagactatttaaacaattaaccc-tttttcaaaattatgggagtgatttgt |
21899092 |
T |
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| Q |
204 |
tcaaaaagaaattatgtaagtgaaaaaagaaactact |
240 |
Q |
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| T |
21899093 |
tc-aaaagaaattatggaagtgaaaaaagaaactact |
21899128 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 5140301 - 5140395
Alignment:
| Q |
25 |
tgtatatagaattttctttgaatgttgtataagcgttttgatttcaattatacactatttcgctttattatttgggggagcaaccatcatttttac |
120 |
Q |
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| T |
5140301 |
tgtatacataattttctttgaa-gttgtacatgtgttttgatttcaataataatttatttcactttattatatgggggaggaatcgtcatttttac |
5140395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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