View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15157_low_25 (Length: 236)
Name: NF15157_low_25
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15157_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43637835 - 43638055
Alignment:
| Q |
1 |
tcagaacaagcatgatgagattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatcctt |
100 |
Q |
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| T |
43637835 |
tcagaacaagcatgatgagattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatcctt |
43637934 |
T |
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| Q |
101 |
gcaaccaatatgtaccatttggatccccagctgggtccgtgcaccaaaaatcatcacctgcataaattaatgcatcacaacccacaactattgataaacc |
200 |
Q |
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| T |
43637935 |
gcaaccaatatgtaccatttggatccccagctgggtccgtgcaccaaaaatcatcacctgcataaattaatgcatcacaacccacaactattgataaacc |
43638034 |
T |
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| Q |
201 |
aatgtgacaataacatgttta |
221 |
Q |
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| T |
43638035 |
aatgtgacaataacatgttta |
43638055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 488982 - 488840
Alignment:
| Q |
18 |
agattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtacca |
117 |
Q |
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| T |
488982 |
agattgaaacatatcccaatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtacca |
488883 |
T |
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| Q |
118 |
tttggatccccagctgggtccgtgcaccaaaaatcatcacctg |
160 |
Q |
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| T |
488882 |
tttggatcaccatatgggtcagtgcaccagaaatcatcacctg |
488840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 34697099 - 34697235
Alignment:
| Q |
19 |
gattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtaccat |
118 |
Q |
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||||| ||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| | |||||||||||||| |
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| T |
34697099 |
gattgaaacatgtcccaatctgggtgaatgaaatttcccatccataaactgttataggcacaatgtaccatgtgacaaccttggagccaatatgtaccat |
34697198 |
T |
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| Q |
119 |
ttggatccccagctgggtccgtgcaccaaaaatcatc |
155 |
Q |
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| T |
34697199 |
ttggatcaccagatggatcagaacaccagaaatcatc |
34697235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 36430808 - 36430881
Alignment:
| Q |
19 |
gattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtg |
92 |
Q |
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|||||||||||||||||||| ||||| || | | ||||||||||||||| || |||| |||||| | |||||| |
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| T |
36430808 |
gattggaacatgtcccaatcaggttgaatcatttgtcccatccataagctattgtaggaacaatgaatcatgtg |
36430881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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