View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15157_low_4 (Length: 541)
Name: NF15157_low_4
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15157_low_4 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 5e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 352 - 541
Target Start/End: Original strand, 48284840 - 48285028
Alignment:
| Q |
352 |
aaatggattcttcttgattttacttataattttgtgtactgtatcaaccacactaaaatgaaatttattcattcacctttcgtgtcaattacagaggcca |
451 |
Q |
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| T |
48284840 |
aaatggattcttcttgattttacttataattttgtgtactgtatcaaccacactaaaatgaaatttattcattcacctttcgtgtcaattacagaggcca |
48284939 |
T |
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| Q |
452 |
tttggcatcgatctgttttccaagggaagactttgtgatnnnnnnntaggtagacgactacataaaactagttcatcaatcaataaaagc |
541 |
Q |
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| T |
48284940 |
tttggcattgatctgttttccaagggaagactttgtgat-aaaaaataggtagacgactacataaaactagttcatcaatcaataaaagc |
48285028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 48284473 - 48284646
Alignment:
| Q |
14 |
aacctgtgagagctcaactgtgaaaaccctgttaaaattaattgtagacaattggtgaaggatccaaatcctaaaccaaaatcaagtcagtcaacaatcc |
113 |
Q |
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| T |
48284473 |
aacctgcgagagctcaactatgaaaaccctgttaaaattaattgtagacaattggtgaaggatccaaatcctaaaccaaaatcaagtcagtcaacaattc |
48284572 |
T |
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| Q |
114 |
ccaaaatgggttggaataacgagacacaaagttcaaaaggaaaataacagaacacaatgaattcagagttcact |
187 |
Q |
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| T |
48284573 |
gcaaaacgggttggaataacgagacacaaagttcaaaaggaaaataacagaacacaatgaattcagagttcact |
48284646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 48284643 - 48284750
Alignment:
| Q |
209 |
cactacccccttccctcttcgtgttcaaccacctagagctctagcagaaaattcaattttaattttcttggcaaccctatcattctggcaactgggagcg |
308 |
Q |
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| T |
48284643 |
cactacccccttccctcttcgtgttcaacc---tagagctctagcagaaaattcaattttaattttcttggcaaccctatcattctggcaactgggagcg |
48284739 |
T |
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| Q |
309 |
gattccatact |
319 |
Q |
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| T |
48284740 |
gattccatact |
48284750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 48284772 - 48284809
Alignment:
| Q |
316 |
tactcacccatataattgtaagtttgtgtatgtttgaa |
353 |
Q |
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| T |
48284772 |
tactcacccatataattgtaagtttgtgtatgtttgaa |
48284809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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