View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15157_low_7 (Length: 417)

Name: NF15157_low_7
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15157_low_7
NF15157_low_7
[»] chr5 (3 HSPs)
chr5 (85-407)||(18136771-18137076)
chr5 (1-89)||(18115446-18115537)
chr5 (147-241)||(18103899-18103993)
[»] chr8 (1 HSPs)
chr8 (308-407)||(37030656-37030755)
[»] chr7 (2 HSPs)
chr7 (322-407)||(1509970-1510055)
chr7 (249-288)||(1509896-1509935)
[»] chr3 (2 HSPs)
chr3 (313-398)||(45801194-45801278)
chr3 (249-290)||(45801130-45801171)
[»] chr6 (1 HSPs)
chr6 (247-288)||(1752000-1752041)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 85 - 407
Target Start/End: Original strand, 18136771 - 18137076
Alignment:
Q  85 atttcacaattattggaacattcatggttgcaactacgtatacattgttccatgccc---tcatcaaaaactatttatgatactggtaacaactttttaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||| |||||||||||||||||||        
T  18136771 atttcacaattattggaacattcatggttgcaactacgtatacattgttccatgtgtggttcatcaaaaactatttctgatactggtaacaacttt---- 18136866  T
Q  182 ttctttttcatgtatgttataatcttagtgtgtttggatggaacaaacaacacaacacttcaagtggcggagggatcatgggggccaggggtggccgtgg 281  Q
          |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||| ||||||||||| |||||||| |||    
T  18136867 ------ttcatgtatgttataatcttagtgcgtttggatggagcaaacaacacaacacttccggtggcggagggaccatgggggccaagggtggccatgg 18136960  T
Q  282 tccccccaannnnnnnnnnnnnnnnnactactattatacaattattttatactgctatttacacatgatgatgaatatggtccctccactattagcattt 381  Q
    |||||||||                 ||||||||||||   |||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| ||    
T  18136961 tccccccaa----------tttttttactactattatatttttattttatactgctatttacacatgatcatgaatatgatccccccactattagcactt 18137050  T
Q  382 gtgtccttttgtatgttgggcctttg 407  Q
    ||||||||||||||||| ||||||||    
T  18137051 gtgtccttttgtatgttaggcctttg 18137076  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 18115446 - 18115537
Alignment:
Q  1 atttcgcaagacacatattttcttgtcatcgccaaccgacactttagaggtg---tgagctttgacactgccaatgaactagtttccatttc 89  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||| ||| |||||||||||||    
T  18115446 atttcgcaagacacatattttcttgtcatcgccaaccgacattttagaggtgtgatgagctttgacactgccaacgaattagtttccatttc 18115537  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 18103899 - 18103993
Alignment:
Q  147 aaaaactatttatgatactggtaacaactttttaattctttttcatgtatgttataatcttagtgtgtttggatggaacaaacaacacaacactt 241  Q
    |||||||||||   ||||| || ||||||||| ||||||||||||||| |||||||||| ||||| ||  |||||||  ||||||  ||||||||    
T  18103899 aaaaactatttccaatacttgtgacaacttttaaattctttttcatgtctgttataatcgtagtgggtacggatggagtaaacaatgcaacactt 18103993  T

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Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 308 - 407
Target Start/End: Complemental strand, 37030755 - 37030656
Alignment:
Q  308 actactattatacaattattttatactgctatttacacatgatgatgaatatggtccctccactattagcatttgtgtccttttgtatgttgggcctttg 407  Q
    |||| |||||||| ||||||||||| || |||||||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||    
T  37030755 actattattatactattattttatattgatatttacacatgatcatgaatatggtccccccattattagcatttgtgtcattttgtatgttgggcctttg 37030656  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 322 - 407
Target Start/End: Original strand, 1509970 - 1510055
Alignment:
Q  322 attattttatactgctatttacacatgatgatgaatatggtccctccactattagcatttgtgtccttttgtatgttgggcctttg 407  Q
    |||||| |||| ||||||||||||||| | | ||||||||||||  || |||||||||||||||| ||||||||||||| ||||||    
T  1509970 attattatataatgctatttacacatggttaagaatatggtcccctcattattagcatttgtgtcattttgtatgttggacctttg 1510055  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 1509896 - 1509935
Alignment:
Q  249 cggagggatcatgggggccaggggtggccgtggtcccccc 288  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  1509896 cggagggaccatgggggccaggggtggccgtggtcccccc 1509935  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 398
Target Start/End: Original strand, 45801194 - 45801278
Alignment:
Q  313 tattatacaattattttatactgctatttacacatgatgatgaatatggtccctccactattagcatttgtgtccttttgtatgtt 398  Q
    |||||||| |||||| |||||| ||||||||| ||| | ||||||||||| |||||| ||||||||||| |||| |||||||||||    
T  45801194 tattatactattattatatactactatttacatatggtcatgaatatggt-cctccattattagcatttctgtcattttgtatgtt 45801278  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 45801130 - 45801171
Alignment:
Q  249 cggagggatcatgggggccaggggtggccgtggtccccccaa 290  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  45801130 cggagggaccatgggggccaagggtggccgtggtccccccaa 45801171  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 1752041 - 1752000
Alignment:
Q  247 ggcggagggatcatgggggccaggggtggccgtggtcccccc 288  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  1752041 ggcggagggaccatgggggccagtggtggccgtggtcccccc 1752000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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