View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15157_low_8 (Length: 392)
Name: NF15157_low_8
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15157_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 30417241 - 30417454
Alignment:
| Q |
11 |
caaaggctaagacaaaactcatccgactccaattcattttgtagtttcttgtagcaccaaaatatcaagtttgtgagaactctacaattcttttcttctt |
110 |
Q |
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| T |
30417241 |
caaaggctaagacaaaactcatccgactccaattcattttgtagtttcttgtagcaccaaaatatcaagtttgtgagcactctacaattcttttattctt |
30417340 |
T |
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| Q |
111 |
ctcatttttatactactccccaaccatcatagaattaaaagagagaactagcaggggtaagggttcactatagttctctcctttgttaacttattaacat |
210 |
Q |
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| T |
30417341 |
ctcatttttatactactccccaaccatcatagaattaaaagagagaactagc------aagggttcactatagttctctcctttgttaacttattaacat |
30417434 |
T |
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| Q |
211 |
ttatctcctccataataacc |
230 |
Q |
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|||||||||||||||||||| |
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| T |
30417435 |
ttatctcctccataataacc |
30417454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 227 - 370
Target Start/End: Original strand, 30418022 - 30418165
Alignment:
| Q |
227 |
aacctgattattactttcacaccacaacacatgagttgggtccaacccgttatgtaactaatctgcatcgtcctattgactattagcgcccccatacaac |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30418022 |
aacctgattattactttcacaccacaacacatgagttgggtccaacccgttatgtaactaatctgcatcgtcctattgactattagcgcccccatacaac |
30418121 |
T |
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| Q |
327 |
tgttagccacctcactgtctttctctctccaaaatgtcttacct |
370 |
Q |
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| T |
30418122 |
tgttagccacctcattgtctttctctctccaaaatgtcttacct |
30418165 |
T |
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