View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15158_high_4 (Length: 249)
Name: NF15158_high_4
Description: NF15158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15158_high_4 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 37019994 - 37019762
Alignment:
| Q |
17 |
ccgtctggtttaagaagaactgctccaaggccaatttcatttaaaggtatgaagttgttcacattttcgaacaataagacctcatctggggatgactcat |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37019994 |
ccgtctgatttaagaagaactgctccaaggccaatttcatttgaaggtatgaagttgttcacattttcgaacaataagacctcttctggggatgactcat |
37019895 |
T |
|
| Q |
117 |
ctggtatcccgtgatttttcaactcatcaagaagttctttttgaaatttctccattggtgtcatcttctgatttataatcctcaaacaacgtctctttga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37019894 |
ctggtatcccgtgatttttcaactcatcaagaagttcttgttgaaatttctccatcggtgtcatcttctgatttataatcctcaaacaacgtctctttga |
37019795 |
T |
|
| Q |
217 |
agagactactgcagacttgaaagaatctgaatc |
249 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| |
|
|
| T |
37019794 |
agagactactacagacttgaaagaatctaaatc |
37019762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 37041922 - 37041693
Alignment:
| Q |
17 |
ccgtctggtttaagaagaactgctccaaggccaatttcatttaaaggtatgaagttgttcacattttcgaacaataagacctcatctggggatgactcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
37041922 |
ccgtctggtttaagaagaactgctccaaggccaatttcatttgaaggtatgaagttgttcatattttcgaacaataagacctcttctggagatgactcat |
37041823 |
T |
|
| Q |
117 |
ctggtatcccgtgatttttcaactcatcaagaagttctttttgaaatttctccattggtgtcatcttctgatttataatcctcaaacaacgtctctttga |
216 |
Q |
| |
|
|||||||| ||||||||||||| ||||| || ||||||| |||||| ||||| || ||||||||||| ||||| ||||||||||||| ||||||||||| |
|
|
| T |
37041822 |
ctggtatctcgtgatttttcaattcatcgaggagttcttgttgaaacttctcaataggtgtcatcttttgattcataatcctcaaactacgtctctttgg |
37041723 |
T |
|
| Q |
217 |
agagactactgcagacttgaaagaatctgaatc |
249 |
Q |
| |
|
|||| |||||||||||| | ||||||||||| |
|
|
| T |
37041722 |
agag---actgcagacttgcatgaatctgaatc |
37041693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 37024945 - 37024716
Alignment:
| Q |
17 |
ccgtctggtttaagaagaactgctccaaggccaatttcatttaaaggtatgaagttgttcacattttcgaacaataagacctcatctggggatgactcat |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| |||||||||||||| | |
|
|
| T |
37024945 |
ccgtctggtttaagaagaactattccaaggccaatttcatttgaaggtatgaagttgttcacatttttaaacaataaggcctcttctggggatgactcgt |
37024846 |
T |
|
| Q |
117 |
ctggtatcccgtgatttttcaactcatcaagaagttctttttgaaatttctccattggtgtcatcttctgatttataatcctcaaacaacgtctctttga |
216 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
37024845 |
ttggtatctcgtgatttttcaactcatcgagaagttcttgttgaaacttctccatcggtgtcatcttctgattaataattctcaaactacgtctctttga |
37024746 |
T |
|
| Q |
217 |
agagactactgcagacttgaaagaatctgaatc |
249 |
Q |
| |
|
|||| |||||||||||| | ||||||||||| |
|
|
| T |
37024745 |
agag---actgcagacttgcatgaatctgaatc |
37024716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 9978924 - 9978765
Alignment:
| Q |
20 |
tctggtttaagaagaactgctccaaggccaatttcatttaaaggtatgaagttgttcacattttcgaacaataagacctcatctggggatgactcatctg |
119 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| |||||||||||||||| ||| | |||||||| ||||| ||||| |||||||||| | |
|
|
| T |
9978924 |
tctggtttaagaaggatgcctccaaggccaatttcattttcaggtatgaagttgttcgtattatgaaacaataaaacctcttctggtgatgactcattta |
9978825 |
T |
|
| Q |
120 |
gtatcccgtgatttttcaactcatcaagaagttctttttgaaatttctccattggtgtca |
179 |
Q |
| |
|
| || || || ||| || |||||| |||||||| | | ||||| |||| ||||||||||| |
|
|
| T |
9978824 |
gcattccctgttttatccactcatgaagaagttgtctgtgaaacttctgcattggtgtca |
9978765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University