View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15158_low_1 (Length: 362)

Name: NF15158_low_1
Description: NF15158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15158_low_1
NF15158_low_1
[»] chr5 (7 HSPs)
chr5 (19-346)||(14773751-14774077)
chr5 (116-343)||(17881020-17881248)
chr5 (134-346)||(15015513-15015727)
chr5 (193-343)||(15048253-15048403)
chr5 (22-107)||(17881278-17881363)
chr5 (22-107)||(15016059-15016147)
chr5 (23-107)||(15048513-15048597)
[»] chr4 (6 HSPs)
chr4 (196-346)||(54158964-54159114)
chr4 (220-346)||(53868220-53868346)
chr4 (196-346)||(51365876-51366025)
chr4 (49-107)||(51366131-51366189)
chr4 (23-107)||(54159170-54159254)
chr4 (60-107)||(53868094-53868141)
[»] chr1 (2 HSPs)
chr1 (19-101)||(36876201-36876283)
chr1 (211-342)||(36876445-36876577)


Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 14774077 - 14773751
Alignment:
Q  19 ataatgcaggccatattccaaagcttacaatccaaccaataaggatcgttatgctgtaaatgttgttgatatttctagggtaattgataatttttattgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14774077 ataatgcaggccatattccaaagcttacaatccaaccaataaggatcgttatgctgtaaatgttgttgatatttctagggtaattgataatttttattgt 14773978  T
Q  119 gacagtgaaagacatttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtgtgttggcatttatttcttccaattcatg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14773977 gacagtgaaagacatttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtgttttggcatttatttcttccaattcatg 14773878  T
Q  219 atttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctttggc 318  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14773877 attcatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaacaaggagtctttggc 14773778  T
Q  319 ctcatgtgacattgcagtttttgttcat 346  Q
    ||||||||||| ||||||||||||||||    
T  14773777 ctcatgtgaca-tgcagtttttgttcat 14773751  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 116 - 343
Target Start/End: Complemental strand, 17881248 - 17881020
Alignment:
Q  116 tgtgacagtgaaagacatttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtgtgt-tggcatttatttcttccaatt 214  Q
    |||||||| ||||||||||||||||||||| |||||||   |||||||||||| |||  ||||||||||||||| | | | | | |||  ||||||||||    
T  17881248 tgtgacagagaaagacatttcatttctttcgccttttcctgcaccaaagtcttcatttgatgtattcattttgtatatattggaattacatcttccaatt 17881149  T
Q  215 catgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctt 314  Q
    || | || ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||  ||||||||||    
T  17881148 cacggttaatcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggtggagtcacaaagctgctagccaataaggagtctt 17881049  T
Q  315 tggcctcatgtgacattgcagtttttgtt 343  Q
    ||||||||||||||||||| |||||||||    
T  17881048 tggcctcatgtgacattgcggtttttgtt 17881020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 134 - 346
Target Start/End: Complemental strand, 15015727 - 15015513
Alignment:
Q  134 ttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtg--tgttggcatttatttcttccaattcatgatttatcgtttta 231  Q
    |||| |||||||| ||||||||||||||||||||| |||  |||||||||||||||   | |||  | |||| |||||||||||||  |||| | ||||     
T  15015727 ttcagttctttcaacttttctcacaccaaagtcttcatttgatgtattcattttgtacatattgatacttatatcttccaattcattgtttaccattttg 15015628  T
Q  232 tttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctttggcctcatgtgacatt 331  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||| ||||||| || | |||||||||| ||| |||||||||||||    
T  15015627 tttgtaggaaaacaaaaaatatattgtgctgagagagatttctgaaggtggagttacaaagctgctagcaaacaaggagtctctgggctcatgtgacatt 15015528  T
Q  332 gcagtttttgttcat 346  Q
    |||||||||||||||    
T  15015527 gcagtttttgttcat 15015513  T

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Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 193 - 343
Target Start/End: Complemental strand, 15048403 - 15048253
Alignment:
Q  193 ttggcatttatttcttccaattcatgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagag 292  Q
    ||||||||||| ||||||| |||| | || ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||    
T  15048403 ttggcatttatatcttccagttcacggttaatcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggaggagtcacaaag 15048304  T
Q  293 ctgctggccaccaaggagtctttggcctcatgtgacattgcagtttttgtt 343  Q
    ||||| ||||  ||| |||||||||||||||||||||||||| ||||||||    
T  15048303 ctgctagccaataagaagtctttggcctcatgtgacattgcaatttttgtt 15048253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 17881363 - 17881278
Alignment:
Q  22 atgcaggccatattccaaagcttacaatccaaccaataaggatcgttatgctgtaaatgttgttgatatttctagggtaattgata 107  Q
    ||||||| |||||||  |||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||||| |||||    
T  17881363 atgcaggtcatattctgaagcttacaatccaaccaacgaggatcgctatgctgtaaatgttgttgatatttctatggtaaatgata 17881278  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 15016147 - 15016059
Alignment:
Q  22 atgcaggccatattccaaagcttacaatcca---accaataaggatcgttatgctgtaaatgttgttgatatttctagggtaattgata 107  Q
    |||||||||||||||  ||||||||||||||   || ||| | ||||||| |||||  ||||||||||||||||||| |||||||||||    
T  15016147 atgcaggccatattctgaagcttacaatccagctacaaatgaagatcgttttgctgccaatgttgttgatatttctacggtaattgata 15016059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 15048597 - 15048513
Alignment:
Q  23 tgcaggccatattccaaagcttacaatccaaccaataaggatcgttatgctgtaaatgttgttgatatttctagggtaattgata 107  Q
    ||||| ||||||||  |||||||||||  ||||||  ||||||||| |||||||||| | || |||||||||||||||| |||||    
T  15048597 tgcagaccatattctgaagcttacaatgaaaccaacgaggatcgttttgctgtaaatatcgtcgatatttctagggtaaatgata 15048513  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 346
Target Start/End: Complemental strand, 54159114 - 54158964
Alignment:
Q  196 gcatttatttcttccaattcatgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctg 295  Q
    |||||| |||||||  ||| ||| |||||| |||| |||| ||| ||| || |||||||||||| ||||||||||| |||||  |||||| | || ||||    
T  54159114 gcatttctttcttcatatttatgttttatcattttgtttgcagggaaagaagaaatatcttgtgctgagagagattcctgaagatggagttaaagggctg 54159015  T
Q  296 ctggccaccaaggagtctttggcctcatgtgacattgcagtttttgttcat 346  Q
    ||||| |  ||||||||||||||||| |||||||||||| || ||||||||    
T  54159014 ctggcgaataaggagtctttggcctcttgtgacattgcaattattgttcat 54158964  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 220 - 346
Target Start/End: Original strand, 53868220 - 53868346
Alignment:
Q  220 tttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctttggcc 319  Q
    |||||| |||| |||| ||| |||||| |||||||||||| ||||||| ||| |||||  |||||| | |||||||||||| |  ||  |||||||||||    
T  53868220 tttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcc 53868319  T
Q  320 tcatgtgacattgcagtttttgttcat 346  Q
    || |||||| |||||||||| ||||||    
T  53868320 tcttgtgacgttgcagttttcgttcat 53868346  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 346
Target Start/End: Complemental strand, 51366025 - 51365876
Alignment:
Q  196 gcatttatttcttccaattcatgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcac-agagct 294  Q
    |||||| ||||||| | |||||| |||||| ||  | ||| ||| |||||| |||||||||||||||| |||||||  ||||  ||||||||  ||| ||    
T  51366025 gcatttctttcttcaagttcatgttttatcatt--agttgcagggaaacaagaaatatcttgtgttgaaagagattcatgaagatggagtcaagagaact 51365928  T
Q  295 gctggccaccaaggagtctttggcctcatgtgacattgcagtttttgttcat 346  Q
    |||||| |  ||||||||||||||||| |||||||||||  |||||||||||    
T  51365927 gctggctaataaggagtctttggcctcttgtgacattgccatttttgttcat 51365876  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 51366189 - 51366131
Alignment:
Q  49 tccaaccaataaggatcgttatgctgtaaatgttgttgatatttctagggtaattgata 107  Q
    |||||||||  ||||||||||||||||||||||||||||| || ||| ||||| |||||    
T  51366189 tccaaccaacgaggatcgttatgctgtaaatgttgttgattttgctatggtaaatgata 51366131  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 54159254 - 54159170
Alignment:
Q  23 tgcaggccatattccaaagcttacaatccaaccaataaggatcgttatgctgtaaatgttgttgatatttctagggtaattgata 107  Q
    ||||||||||||||  ||  |||||||||||||||  |||||| ||||||||| ||||| ||||||  ||||| ||||| |||||    
T  54159254 tgcaggccatattctgaaatttacaatccaaccaacgaggatcattatgctgtgaatgtggttgatgattctatggtaaatgata 54159170  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 53868094 - 53868141
Alignment:
Q  60 aggatcgttatgctgtaaatgttgttgatatttctagggtaattgata 107  Q
    |||||||||||| ||||||||||||||||| ||||| ||||| |||||    
T  53868094 aggatcgttatgttgtaaatgttgttgataattctatggtaaatgata 53868141  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 36876201 - 36876283
Alignment:
Q  19 ataatgcaggccatattccaaagcttacaatccaaccaataaggatcgttatgctgtaaatgttgttgatatttctagggtaa 101  Q
    ||||||||||||||||||  ||||||| |||||||||||  ||||||||||||||||||||||||||||||| || |||||||    
T  36876201 ataatgcaggccatattctgaagcttataatccaaccaacgaggatcgttatgctgtaaatgttgttgatatatccagggtaa 36876283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 342
Target Start/End: Original strand, 36876445 - 36876577
Alignment:
Q  211 aattcatgattt-atcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaagga 309  Q
    |||||||||||| || ||||| |||| ||||||||| ||||||||| ||||||| ||||||| | ||| ||| |||  ||   ||| |||||  ||||||    
T  36876445 aattcatgattttattgttttgtttgcaggaaaacagaaaatatctcgtgttgaaagagattccagaaggtgaagttgcaagactggtggccgacaagga 36876544  T
Q  310 gtctttggcctcatgtgacattgcagtttttgt 342  Q
    |||||||||||||||||||||||||||||||||    
T  36876545 gtctttggcctcatgtgacattgcagtttttgt 36876577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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