View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15158_low_4 (Length: 251)
Name: NF15158_low_4
Description: NF15158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15158_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 30720404 - 30720655
Alignment:
| Q |
1 |
tgaagatccttatagaccttgccatagtgacccatccattgctcatgcttctcat---------------cttgtagagtacgagaagtgacttgaatag |
85 |
Q |
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| T |
30720404 |
tgaagatccttatagactttgccatagtgaaccatccattgttcatgcttctcatatatgttggagtcatcttggagagtacgagaagtgacttgaatag |
30720503 |
T |
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| Q |
86 |
caaacaatcccaaacataaaagtaatgacaatgaaatgctatgatataattgattattggcagtcatcgtaattaattagtaaatgatgagactaatttg |
185 |
Q |
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| T |
30720504 |
caaacaatcccaaacataaaagcaatgacaatgaaatgctatgatataattgattattggcagtcatcgtaattaattagtaaaggatgagactaatttg |
30720603 |
T |
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| Q |
186 |
gaaccaacacctgcttcaggttgattaatatttatcagttaaaggtgagaaa |
237 |
Q |
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| T |
30720604 |
gaaccaacaactgcttcaggttgattaatatttatcagttaaaggtgagaaa |
30720655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 30892038 - 30891858
Alignment:
| Q |
1 |
tgaagatccttatagaccttgccatagtgacccatccattgctcatgcttctcat---------------cttgtagagtacgagaagtgacttgaatag |
85 |
Q |
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| T |
30892038 |
tgaagatccttatagactttgccatagtgaaccatccattgttcatgcttctcatatatgatggagtcatcttggagagtacgagaagtgacttgaatag |
30891939 |
T |
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| Q |
86 |
caaacaatcccaaacataaaagtaatgacaatgaaatgctatgatataattgattattggcagtcatcgtaattaattagt |
166 |
Q |
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| T |
30891938 |
caaacaatcccaaacataaaagcaatgacaatgaaatgctatgatataattgattattggcagtcatggtaattaattagt |
30891858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 30880955 - 30880793
Alignment:
| Q |
1 |
tgaagatccttatagaccttgccatagtgacccatccattgctcatgcttctcat---------------cttgtagagtacgagaagtgacttgaatag |
85 |
Q |
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||||||||||||||||| |||||||||||| |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
30880955 |
tgaagatccttatagactttgccatagtgaaccatccattgttcatgcttctcatatatgatggagtcatcttggagagtacgagaagtgacttgaatag |
30880856 |
T |
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| Q |
86 |
caaacaatcccaaacataaaagtaatgacaatgaaatgctatgatataattgattattggcag |
148 |
Q |
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| T |
30880855 |
caaacaatcccaagcagaaaaacaatgccaatgaaatgctatgatataattgattattggcag |
30880793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 16868276 - 16868369
Alignment:
| Q |
52 |
tcatcttgtagagtacgagaagtgacttgaatagcaaacaatcccaaacataaaagtaatgacaatgaaatgctatgatataattgattattggcag |
148 |
Q |
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| T |
16868276 |
tcatcttggagagtgcgagaagtgacttgaatagcaaacaatcctaaacatagaagcaatgccaatgaaa---tatgatataagtgattattggcag |
16868369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 8898509 - 8898417
Alignment:
| Q |
53 |
catcttgtagagtacgagaagtgacttgaatagcaaacaatcccaaacataaaagtaatgacaatgaaatgctatgatataattgattattggcag |
148 |
Q |
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| T |
8898509 |
catcttggagagtacgagaggtgacttgaatagcccacaatcccaagcagaaaaccaatgccaatgaaa---tatgatataattgattattagcag |
8898417 |
T |
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