View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15159_high_2 (Length: 369)
Name: NF15159_high_2
Description: NF15159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15159_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 33699345 - 33699691
Alignment:
| Q |
1 |
ttgaatgagaaggatctattaggccatttgttaaactacaaggatgaaaaagggaaaatgttaagtgatgaggaagttgctgataatgtgattggagtac |
100 |
Q |
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| T |
33699345 |
ttgaatgagaaggatctattaggccatttgttaaactacaaggatgaaaaagggaaaatgttaagtgatgaggaagttgctgataatgtgattggagtac |
33699444 |
T |
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| Q |
101 |
tatttgcagctcaagatactacagcaagtgttcttacttggattctcaagtatcttcatgatcaccagaaacttcttgaagccataaaagtaagtgtttt |
200 |
Q |
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| T |
33699445 |
tatttgcagctcaagatactacagcaagtgttcttacttggattctcaagtatcttcatgatcaccagaaacttcttgaagccataaaagtaagtgtttt |
33699544 |
T |
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| Q |
201 |
tgtctccatcatggatttcctattgctaataattggccctcagtgttgaaattgaaaatgagtcaaatcataataaactgtatatattacaggctgagca |
300 |
Q |
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| T |
33699545 |
tgtctccatcatggatttcctattgc---ttattggccctcagtgtggaaattgaaaatgagtcaaatcataataaactgtatatattacaggctgagca |
33699641 |
T |
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| Q |
301 |
gatggcagtatgtgataccaatgatggagggaagattccattgacatggg |
350 |
Q |
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| T |
33699642 |
gatggcagtatgtgataccaatgatggagggaagattccattgacatggg |
33699691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 33658659 - 33658856
Alignment:
| Q |
1 |
ttgaatgagaaggatctattaggccatttgttaaactacaaggatgaaaaagggaaaatgttaagtgatgaggaagttgctgataatgtgattggagtac |
100 |
Q |
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|||| ||||||| ||||||||||| | || |||||||||||||||||||| || ||| ||| ||||| ||| |||||||||||||||||||||||| |
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| T |
33658659 |
ttgattgagaagaatctattaggcaacttcttaaactacaaggatgaaaatggacaaactctaacagatgaagaaattgctgataatgtgattggagtac |
33658758 |
T |
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| Q |
101 |
tatttgcagctcaagatactacagcaagtgttcttacttggattctcaagtatcttcatgatcaccagaaacttcttgaagccataaaagtaagtgtt |
198 |
Q |
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| T |
33658759 |
tatttgcagctcaagatactacagcaagtgttcttacttggattctcaagtatcttcatgatcaccagaaacttcttgaagccataaaagtaagtgtt |
33658856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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