View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15159_low_2 (Length: 512)
Name: NF15159_low_2
Description: NF15159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15159_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 50407280 - 50407786
Alignment:
| Q |
1 |
ttggaagtgcttcagttgttctaattttgctgttcctacctcttgctgttgtctttgctgaacagaaaaagagtcaaaagcttgcatttgttgatccatt |
100 |
Q |
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| T |
50407280 |
ttggaagtgcttcagttgttctaattttgctgttcctacctcttgctgttgtctttgttgaacagaaaaagagtcaaaagcttgcatttgtcgatccatt |
50407379 |
T |
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| Q |
101 |
ttcggttaaaatagtaactgatcaagaagtgaaagagtctgcagcaaaaaattgtgatactaatgcaatggtttgtgttgttgaagtaaaagaaactaga |
200 |
Q |
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| T |
50407380 |
ttcagttaaaatagtaactgatcaagaagtgaaagagtctgcagcaaaaaattgtgatactaatgcaatggtttgtgttgttgaagtaaaagaaactaga |
50407479 |
T |
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| Q |
201 |
tggtggcaaaatatttttagtccacctgaacaaggtgaagattttactatattacaagcccttttcagcatagacatgttattgctattctttgctggca |
300 |
Q |
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| T |
50407480 |
tggtggcaaaatatttttagtccacctgaacaaggtgaagattttactatattacaagcccttttcagcatagacatgttattgctattctttgctggca |
50407579 |
T |
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| Q |
301 |
catgtggtgttggtggaactttaacagcaattgataatttaggtcaaattggaacctcactcggatacccaaaaacaagcataagcacatttgtttcatt |
400 |
Q |
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| T |
50407580 |
catgtggtgttggtggaactttaacagcaattgataatttaggtcaaattggaacctcacttggatacccaaaaacaagcataagcacatttgtttcatt |
50407679 |
T |
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| Q |
401 |
agtgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttctaacaaagtacaaatttccacgaccactcatgttcacattg |
500 |
Q |
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| T |
50407680 |
agtgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttttaacaaagtacaaatttccacgaccactcatgttcacattg |
50407779 |
T |
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| Q |
501 |
atgatgt |
507 |
Q |
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| T |
50407780 |
attatgt |
50407786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 303 - 478
Target Start/End: Original strand, 50385553 - 50385728
Alignment:
| Q |
303 |
tgtggtgttggtggaactttaacagcaattgataatttaggtcaaattggaacctcactcggatacccaaaaacaagcataagcacatttgtttcattag |
402 |
Q |
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| T |
50385553 |
tgtggtgttggaggaactttgacagcaattgataatcttggtcagataggaacatcactaagatatccaaagaaaagcataagcacttttgtgtctttag |
50385652 |
T |
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| Q |
403 |
tgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttctaacaaagtacaaatttcc |
478 |
Q |
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| T |
50385653 |
taagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaacaaagtacagatttcc |
50385728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 303 - 478
Target Start/End: Original strand, 50393972 - 50394147
Alignment:
| Q |
303 |
tgtggtgttggtggaactttaacagcaattgataatttaggtcaaattggaacctcactcggatacccaaaaacaagcataagcacatttgtttcattag |
402 |
Q |
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| T |
50393972 |
tgtggtgttggaggaactttgacagcaattgataatcttggtcagataggaacatcactaagatatccaaagaaaagcataagcacttttgtgtctttag |
50394071 |
T |
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| Q |
403 |
tgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttctaacaaagtacaaatttcc |
478 |
Q |
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| T |
50394072 |
taagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaacaaagtacagatttcc |
50394147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 478
Target Start/End: Original strand, 50390628 - 50390873
Alignment:
| Q |
233 |
aggtgaagattttactatattacaagcccttttcagcatagacatgttattgctattctttgctggcacatgtggtgttggtggaactttaacagcaatt |
332 |
Q |
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|||||| |||| ||| ||| | ||||| |||||||||||||||||||| | ||||| | || | | |||||| |||||||| | || |||||| || |
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| T |
50390628 |
aggtgaggattatacgatacttcaagcacttttcagcatagacatgttgatactatttgtggcatgtatttgtggtattggtggatcattgacagcagtt |
50390727 |
T |
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| Q |
333 |
gataatttaggtcaaattggaacctcactcggatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttt |
432 |
Q |
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| T |
50390728 |
gataatcttggtcagataggaacatcactaagatatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttt |
50390827 |
T |
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| Q |
433 |
tttctggttttgtttctgaacatgttctaacaaagtacaaatttcc |
478 |
Q |
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| T |
50390828 |
tctcaggatttgtttctgaacattttctaacaaagtacagatttcc |
50390873 |
T |
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