View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15159_low_4 (Length: 362)
Name: NF15159_low_4
Description: NF15159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15159_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 43400337 - 43400008
Alignment:
| Q |
16 |
tgtgtggttgcgtcctgatccaatccaatgaaagcataaatatattacaaacccaaatcattgccttcataaaagcataaatatattacaa-cccaaatc |
114 |
Q |
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| T |
43400337 |
tgtgtggttgcgtcctgatccaatccaatgaaagcataaatatattacaaacccaaatcattgccttcataaaagcataaatatattacaaacccaaatc |
43400238 |
T |
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| Q |
115 |
atattaatttcaacaattcaccatcctttgtaactagcttgctaattattaaaggccctctcagctctatgtgctcctttaaataccttattttctaacc |
214 |
Q |
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| T |
43400237 |
atattaatttcaacaattcaccatcctttgtaactagcttgctaattattaaaggccctctcagctctatgtgctcctttaaataccttattttctaacc |
43400138 |
T |
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| Q |
215 |
ttattaccacattaattgttcagcctaatttttgcatacagcgtgtatagctagcttccaatacattcatgaaattatatatggaatataaatagctagt |
314 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43400137 |
ttattaccac----attgttcagcctaatttttgcatacagcgtgtatagctagcttccaatacattcatgaaattatatatgaaatataaatagctagt |
43400042 |
T |
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| Q |
315 |
tagtgattatatttatttatgggcatttgagttt |
348 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
43400041 |
tagtgattatatttatttatgggcatttgagttt |
43400008 |
T |
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