View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15159_low_6 (Length: 251)
Name: NF15159_low_6
Description: NF15159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15159_low_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 33699118 - 33699356
Alignment:
| Q |
13 |
atactccaaagctcttttggtaagctccactgcactgcaacttttggtttatatatgattttagtagttctaaatttcgatcactaactgcaattgcggt |
112 |
Q |
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| T |
33699118 |
atactccaaagctcttttggtaagctccactgcactgcaacttttggtttatatatgattttagtagttctaaatttcgatcactaactgcaattgcggt |
33699217 |
T |
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| Q |
113 |
cgcagtataaaagttctagaataatataacttgactaaaaattggttaaattgtctaattatattaggcgaggcggcgaattcaagagattataagtgag |
212 |
Q |
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| T |
33699218 |
cgcagtataaaagttttagaataatataacttgactaaaaattggttaaattgtctaattaaattaggcgaggcggcgaattcaagagattataagtgag |
33699317 |
T |
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| Q |
213 |
ataatttgcaagagaaaggagcagagattgaatgagaag |
251 |
Q |
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| T |
33699318 |
ataatttgcaagagaaaggagcaaagattgaatgagaag |
33699356 |
T |
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Back To:
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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 33658597 - 33658670
Alignment:
| Q |
178 |
aggcgaggcggcgaattcaagagattataagtgagataatttgcaagagaaaggagcagagattgaatgagaag |
251 |
Q |
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||||||||| | |||||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |
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| T |
33658597 |
aggcgaggcagagaattcgggagattataagtgaaataatttgcaagaaaaaggagcagagattgattgagaag |
33658670 |
T |
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