View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1515_high_2 (Length: 657)
Name: NF1515_high_2
Description: NF1515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1515_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 9e-78; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 44749637 - 44749796
Alignment:
| Q |
17 |
agattcccctcacgttgttatcatgtctagaagcttcagtcataatttacaacttctcaaggaaatatgtgtgtttcatttgaataagatataggatagg |
116 |
Q |
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| T |
44749637 |
agattctcctcacgttgttatcatgtctagaagcttcggtcataatttacaacttctcaaggatatatgtgtgtttcatttgaataagatataggatagg |
44749736 |
T |
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| Q |
117 |
gctgctattagtttaattaaaaaatcttgtgatattaactaaagtcagatacaaatttta |
176 |
Q |
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| T |
44749737 |
gctgctattagtttaattaaaaaatcttgtgatattaactaaagtcagatacaaatttta |
44749796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 187 - 358
Target Start/End: Original strand, 44753113 - 44753286
Alignment:
| Q |
187 |
ttttaattctgaaaattgtcttgtagtgtgtcacgtgatgtgtaataattggtcaacggaacacattgttagtttcgtttttt--accgtgaacttaata |
284 |
Q |
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| T |
44753113 |
ttttaattctgaaaattgtcttgtagtgtgtcacgtggtgtgtaataattggtcaacgtaacacattgttagtttttttttttctaacgtgaacttaata |
44753212 |
T |
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| Q |
285 |
gatggaccaattgcaaaatagttaaaaagtgcatgcactaatgtcaaattatggtcaaaatgcaaggactaata |
358 |
Q |
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| T |
44753213 |
gaaggaccaattgcaaaatatttaaaaagtgcaggcactaatgtcaaattatggtcaaaatgcaaggactaata |
44753286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 9599858 - 9599822
Alignment:
| Q |
188 |
tttaattctgaaaattgtcttgtagtgtgtcacgtga |
224 |
Q |
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| T |
9599858 |
tttaattctgaaaattgtcttgtagtgtgccacgtga |
9599822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 9605750 - 9605715
Alignment:
| Q |
189 |
ttaattctgaaaattgtcttgtagtgtgtcacgtga |
224 |
Q |
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| T |
9605750 |
ttaattctgaaaattgtcttgtagtgtgccacgtga |
9605715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 36582620 - 36582677
Alignment:
| Q |
187 |
ttttaattctgaaaattgtcttgtagtgtgtcacgtgatgtgtaataattggtcaacg |
244 |
Q |
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| T |
36582620 |
ttttaattttgaaaattgtctttttgtgtgccacgtggtgtgtaataattgatcaacg |
36582677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 45415394 - 45415450
Alignment:
| Q |
187 |
ttttaattctgaaaattgtcttgtagtgtgtcacgtgatgtgtaataattggtcaac |
243 |
Q |
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| T |
45415394 |
ttttaattttaaaaattatcttttagtgtgtcatgtgacgtgtaataattggtcaac |
45415450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 39093130 - 39093081
Alignment:
| Q |
308 |
aaaaagtgcatgcactaatgtcaaattatggtcaaaatgcaaggactaat |
357 |
Q |
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| T |
39093130 |
aaaaagtgtatggactaatgtcaaaatatggtcaaagtgcagggactaat |
39093081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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