View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1515_high_3 (Length: 575)
Name: NF1515_high_3
Description: NF1515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1515_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 2 - 561
Target Start/End: Original strand, 27939538 - 27940097
Alignment:
| Q |
2 |
ctccttgcatttctagaattattactatcgaaagatctcctagatgacgacacttcattattctccaaagcattaatttgtaacaaaccattatcccgct |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |
|
|
| T |
27939538 |
ctccttgcatttctagaattattactatcgaaagatctcctagatgacgacacttcattattctccaaagcattaatttgtgacaaaccactatctcgct |
27939637 |
T |
|
| Q |
102 |
tttccattgaggacacttgttgtgaacctacattttcattttcatgttgtggcccattgtcgttaacattattacctcgttcaatgtttgatgacaacaa |
201 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27939638 |
tttccattgaagacacttgttgtggacctacattttcattttcatgttgtggcccattgtcgttaacattattacctcgttcaatgtttgatgacaacaa |
27939737 |
T |
|
| Q |
202 |
ttcttcctcagtattttgtcgttgaggaagaacaatatcatcagggttcaccttatagcgacacagtgggcacgaggaatgttcatcaagccacatgtca |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27939738 |
ttcttcctcagtattttgtcgttgaggaagaacaatatcatcagggttcaccttatagcgacacagtgggcacgaggaatgttcatcaagccacatgtca |
27939837 |
T |
|
| Q |
302 |
acacattccatgtggaaagcatgtttgcattttggcaataacctaagtacatcgggatcctcaaacccattgagacaaactgcacattcaagtccannnn |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27939838 |
acacattccatgtggaaagcatgtttgcattttggcaataacctaagtacatcgggatcctcaaacccattgagacaaactgcacattcaagtccatttt |
27939937 |
T |
|
| Q |
402 |
nnnngccactcaatgacccaaacttaaaaaccggcaatgattcaacaaccgcgcgttcgattccagagtttttcctcttatgcaaatttgattctccatt |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27939938 |
ttttgccactcaatgacccaaacttaaaaaccggcaatgattccacaaccgcgcgttcgattccagagtttttcctcttatgcaaatttgattctccatt |
27940037 |
T |
|
| Q |
502 |
gggattcgggttgctagcaacgggcatatctgcacggttgcagtgtctggcgtagagaag |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27940038 |
gggattcgggttgctagcaacgggcatatctgcacggttgcagtgtctggcgtagagaag |
27940097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University