View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1515_high_5 (Length: 441)
Name: NF1515_high_5
Description: NF1515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1515_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 425
Target Start/End: Original strand, 33041409 - 33041819
Alignment:
| Q |
11 |
atcaggttcaatgtttgggacagtagcaggtctagaactatatatgataaggaattgaattaggcaaaacaacattcggaaaaggaacacaaggtgcagt |
110 |
Q |
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| T |
33041409 |
atcaggttcaatgtttgggacagtagcaggtctagaactat----gataaggaattgaattaggcaaaacaacattcggaaaaggaacacgaggtgcagt |
33041504 |
T |
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| Q |
111 |
taaattgggataaggattggaaggaaaaagtgtcttcatggaatatgtgaaatgatctagagaacaattcataaactttgtaaactttatagccacgggc |
210 |
Q |
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| T |
33041505 |
taaattgggataaggattggaaggaaaaagtgtcttcatggaatatgtgaaatgatctagagaacaattcataaactttgtaaactttatagccacgggc |
33041604 |
T |
|
| Q |
211 |
tgccaacaaagacgcatgagttagctctttgtgtgaatttgttgcaatgtcattgaggtataatagatatgtagcacatacaaccaaaaacgttgaaatc |
310 |
Q |
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| T |
33041605 |
tgccaacaaagacgcatgagttagctctttgtgtgaatttgttgcaatgtcgttgaggtataatagatatgtagcacatacaaccaaaaacgtcgaaatc |
33041704 |
T |
|
| Q |
311 |
agcgtatagaggcaatttatcaaacacaaactcaaaacgagactttcctttgaaaacttggtaggcaagttatcttaaaacataaaggaaattgctacat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
33041705 |
agcgtatagaggcaatttatcaaacacaaactcaaaacgagactttcctttgaaaacttgagaggcaagttatcttaaaacataaaggacattgctacat |
33041804 |
T |
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| Q |
411 |
tcaacacgtgttgat |
425 |
Q |
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| T |
33041805 |
tcaacacgtgttgat |
33041819 |
T |
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