View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1515_low_1 (Length: 798)
Name: NF1515_low_1
Description: NF1515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1515_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 411 - 732
Target Start/End: Complemental strand, 37341359 - 37341038
Alignment:
| Q |
411 |
caatgaaaagacttctgcttatgaactgttgttgtgttcactgtggtcggttgcttgcgacgatgacaataagataaaggtttattgtccctttctctta |
510 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37341359 |
caatgaaaagccttctgcttatgaaccgttgttgtgttcactgtggtcggtcgcttgcaacgatgacaataagataaaggtttattgtccctttctctta |
37341260 |
T |
|
| Q |
511 |
ttctctataaacattgcatttggtactattttatgattattttgtctgttattttgtctctataatgagtactgttgtttttcaatgactaatttaacta |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37341259 |
ttctctataaacattgcatttggtactattttatgattattttgtctgttattttgtctctataatgagtactgttgtttttcaatgactaatttaacta |
37341160 |
T |
|
| Q |
611 |
aagtcaagttttccagttttctaaaatcaacattattttcaaagatagatttagaattaacatgaactcacacaacatggatctttgatttatggtatta |
710 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37341159 |
aagtcaagttttccagttttctaaaatcaacattattttcaaagatagatttagaattaacatgcactcacacaacatggatctttgatttatggtattt |
37341060 |
T |
|
| Q |
711 |
ctttcagtggtattcataatcc |
732 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
37341059 |
ctttcagtggtattcataatcc |
37341038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 429 - 562
Target Start/End: Original strand, 23890912 - 23891045
Alignment:
| Q |
429 |
ttatgaactgttgttgtgttcactgtggtcggttgcttgcgacgatgacaataagataaaggtttattgtccctttctcttattctctataaacattgca |
528 |
Q |
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|||||||||||||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
23890912 |
ttatgaactgttgttgtgttcactgtggccggtcacttgcaactgtgacaataagataaaggtttattgtccatttctcttattctctataaacattgta |
23891011 |
T |
|
| Q |
529 |
tttggtactattttatgattattttgtctgttat |
562 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
23891012 |
tttggtactatttgatgattattttgtctgttat |
23891045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 411 - 732
Target Start/End: Complemental strand, 25889796 - 25889475
Alignment:
| Q |
411 |
caatgaaaagacttctgcttatgaactgttgttgtgttcactgtggtcggttgcttgcgacgatgacaataagataaaggtttattgtccctttctctta |
510 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25889796 |
caatgaaaagccttctgcttatgaacagttgttgtgttcactgtggtcggtcgcttgcaacgatgacaataagataaaggtttattgtccctttctctta |
25889697 |
T |
|
| Q |
511 |
ttctctataaacattgcatttggtactattttatgattattttgtctgttattttgtctctataatgagtactgttgtttttcaatgactaatttaacta |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25889696 |
ttctctataaacattgcatttggtactattttatgattattttgtctgttattttgtctctataatgagtactgttgtttttcaatgactaatttaacta |
25889597 |
T |
|
| Q |
611 |
aagtcaagttttccagttttctaaaatcaacattattttcaaagatagatttagaattaacatgaactcacacaacatggatctttgatttatggtatta |
710 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25889596 |
aagtcaagttttccagttttctaaaatcaacattattttcaaagatagatttagaattaacatgcactcacacaacatggatctttgatttatggtattt |
25889497 |
T |
|
| Q |
711 |
ctttcagtggtattcataatcc |
732 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
25889496 |
ctttcagtggtattcataatcc |
25889475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 38953126 - 38953065
Alignment:
| Q |
295 |
gtatcttcataacttgaaaagaaattcataagaattgggttatcacaaatctagaagcatgtg |
357 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||| |
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| T |
38953126 |
gtatcttcataacttaaaaagaaattcataagaatagggttatca-aaaactagaagcatgtg |
38953065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 295 - 357
Target Start/End: Original strand, 22966797 - 22966859
Alignment:
| Q |
295 |
gtatcttcataacttgaaaa-gaaattcataagaattgggttatcacaaatctagaagcatgtg |
357 |
Q |
| |
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||||||||||||||| |||| ||||||||||||||| ||||||||| |||| |||||||||||| |
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| T |
22966797 |
gtatcttcataacttaaaaaagaaattcataagaatagggttatcaaaaat-tagaagcatgtg |
22966859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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