View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1515_low_4 (Length: 499)

Name: NF1515_low_4
Description: NF1515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1515_low_4
NF1515_low_4
[»] chr8 (12 HSPs)
chr8 (16-341)||(28430010-28430338)
chr8 (117-336)||(17844904-17845128)
chr8 (186-341)||(1214248-1214403)
chr8 (191-341)||(13241122-13241271)
chr8 (188-341)||(5725815-5725970)
chr8 (228-410)||(17856827-17857008)
chr8 (116-174)||(23273825-23273883)
chr8 (272-336)||(25382264-25382328)
chr8 (116-262)||(12722309-12722456)
chr8 (272-341)||(42573197-42573266)
chr8 (127-172)||(24580033-24580078)
chr8 (116-174)||(12520552-12520610)
[»] chr4 (11 HSPs)
chr4 (186-498)||(9363079-9363387)
chr4 (127-334)||(27572457-27572666)
chr4 (116-336)||(22851215-22851437)
chr4 (121-338)||(30563537-30563756)
chr4 (127-337)||(36193317-36193527)
chr4 (115-177)||(12885044-12885106)
chr4 (251-336)||(25505298-25505383)
chr4 (246-325)||(12885645-12885724)
chr4 (190-255)||(25505205-25505270)
chr4 (128-172)||(19145910-19145954)
chr4 (227-316)||(23464244-23464333)
[»] chr7 (5 HSPs)
chr7 (118-341)||(7738788-7739012)
chr7 (186-412)||(24504294-24504519)
chr7 (190-341)||(35759122-35759276)
chr7 (187-341)||(2746691-2746845)
chr7 (293-338)||(19127081-19127126)
[»] chr1 (10 HSPs)
chr1 (117-341)||(3167298-3167522)
chr1 (116-410)||(4941606-4941904)
chr1 (186-336)||(46149933-46150083)
chr1 (186-337)||(13269270-13269421)
chr1 (117-341)||(21485885-21486111)
chr1 (130-399)||(40777901-40778172)
chr1 (116-336)||(8221669-8221887)
chr1 (186-327)||(23288603-23288744)
chr1 (252-341)||(34771275-34771364)
chr1 (127-172)||(51879054-51879099)
[»] chr2 (14 HSPs)
chr2 (117-341)||(36076293-36076520)
chr2 (190-410)||(20506600-20506819)
chr2 (132-341)||(37605879-37606090)
chr2 (130-341)||(36520881-36521091)
chr2 (187-326)||(8267385-8267524)
chr2 (190-332)||(11033109-11033251)
chr2 (115-335)||(20511684-20511904)
chr2 (186-341)||(39303422-39303577)
chr2 (190-408)||(13536885-13537099)
chr2 (187-341)||(21136320-21136473)
chr2 (117-172)||(6606255-6606310)
chr2 (117-172)||(13511161-13511216)
chr2 (307-336)||(42074781-42074810)
chr2 (128-172)||(11033270-11033314)
[»] chr6 (7 HSPs)
chr6 (128-341)||(24209202-24209417)
chr6 (228-338)||(33105997-33106107)
chr6 (139-322)||(2603791-2603974)
chr6 (127-410)||(3860843-3861128)
chr6 (121-337)||(24585077-24585293)
chr6 (117-174)||(15494243-15494300)
chr6 (367-404)||(33108042-33108079)
[»] chr5 (6 HSPs)
chr5 (186-332)||(41732252-41732398)
chr5 (206-338)||(37941227-37941359)
chr5 (241-341)||(28440819-28440919)
chr5 (127-172)||(43585682-43585727)
chr5 (116-175)||(19527955-19528014)
chr5 (116-173)||(3956134-3956191)
[»] chr3 (9 HSPs)
chr3 (117-341)||(52032804-52033033)
chr3 (190-341)||(26536389-26536540)
chr3 (218-341)||(29019883-29020005)
chr3 (186-336)||(26104446-26104596)
chr3 (127-174)||(53461796-53461843)
chr3 (118-174)||(47042663-47042719)
chr3 (127-174)||(21795460-21795507)
chr3 (129-172)||(33440712-33440755)
chr3 (274-328)||(53461648-53461702)
[»] scaffold0443 (1 HSPs)
scaffold0443 (186-341)||(7483-7637)
[»] scaffold0069 (1 HSPs)
scaffold0069 (272-328)||(2298-2354)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 28430338 - 28430010
Alignment:
Q  16 gtcaaattagaattcagtgcattcttgttactattttgctcagacacttacaaaagttttttgtgaaatgaacaaaagcataacttccactggatcagcc 115  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  28430338 gtcaaattagaattcagtgtattcttgttactattttgctcagacacttacaaaagttttttgttaaatgaacaaaaacataacttccactggatcagcc 28430239  T
Q  116 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatg---nnnnnnnncctctaaaaaattaatttggttataag 212  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||           ||| ||||||||||||||||||||||     
T  28430238 tcagggccgacctaagggccaagcaacccaagcaagggctttaggcctcaaaattttggatgaaaaaaaaaagcctttaaaaaattaatttggttataaa 28430139  T
Q  213 tataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctcca 312  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28430138 tataatatatgatagataaatttaagacatttacataacttaactggttaccaagaaggcctcaattactcttggtaatgaatttaaattttggtctcca 28430039  T
Q  313 caaaattgattttatataaatattctgtt 341  Q
    |||||||||||||||||||||||||||||    
T  28430038 caaaattgattttatataaatattctgtt 28430010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 117 - 336
Target Start/End: Complemental strand, 17845128 - 17844904
Alignment:
Q  117 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnnc-----ctctaaaaaattaatttggttataa 211  Q
    |||||||| ||||||||||||||||||||| |||||| | |||||||||||||||||||||              |||||||||||||||||||||||||    
T  17845128 cagggccggtctaagggccaagcaacccaagcaagggttataggcctcaaaattttggatgaaaaaaaaaaaaatctctaaaaaattaatttggttataa 17845029  T
Q  212 gtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctcc 311  Q
    ||||| ||||  | ||||||||| ||||||||| |||| |||||||| ||||||| ||| ||||||||||||||  | ||||| |||||||||| ||||     
T  17845028 gtatattatataacagataaatttaagacatttgcatagcttaactgattaccaaaaagacctcaattactcttgatcatgaaattaaattttgatctct 17844929  T
Q  312 acaaaattgattttatataaatatt 336  Q
    |||||||||||||||||||||||||    
T  17844928 acaaaattgattttatataaatatt 17844904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 186 - 341
Target Start/End: Original strand, 1214248 - 1214403
Alignment:
Q  186 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 285  Q
    |||||||||||||||||   ||||||||||| |||| || | |||||||| |||||||| |||| |||||||| ||||||| |||  |||||||||||||    
T  1214248 cctctaaaaaattaattaatttataagtatattatatgacaaataaattacagacatttgcatagcttaactgattaccaaaaagatctcaattactctt 1214347  T
Q  286 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 341  Q
     || ||||||| || |||||||||||||||||||||||||||||||||||| ||||    
T  1214348 ggtcatgaattcaatttttggtctccacaaaattgattttatataaatattatgtt 1214403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 191 - 341
Target Start/End: Complemental strand, 13241271 - 13241122
Alignment:
Q  191 aaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaa 290  Q
    ||||| ||||||||||||| |||||| |||| ||||||||||||| |||||||| |||| |||||||| ||| ||| |||| || |||||||||   | |    
T  13241271 aaaaatttaatttggttatgagtatattatatgatagataaattacagacatttgcatagcttaactgattatcaaaaaggtct-aattactctagatca 13241173  T
Q  291 tgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 341  Q
     ||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  13241172 cgaactcaaattttggtctccacaaaattgattttatataaatattctgtt 13241122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 188 - 341
Target Start/End: Complemental strand, 5725970 - 5725815
Alignment:
Q  188 tctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttg 287  Q
    ||||||||||||||||| |||||| |||| |||| ||||||||||||| |||||||| |||||||||  || ||| ||| || ||||||||| ||||  |    
T  5725970 tctaaaaaattaatttgattataaatatattatatgatagataaattatagacatttgcataacttacttgattatcaaaaatgcctcaatttctctagg 5725871  T
Q  288 taatgaatttaaattttggtctc--cacaaaattgattttatataaatattctgtt 341  Q
    | | ||| | |||||||||||||   ||||||||||||||||||||||||| ||||    
T  5725870 tcacgaaatcaaattttggtctctatacaaaattgattttatataaatattatgtt 5725815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 228 - 410
Target Start/End: Original strand, 17856827 - 17857008
Alignment:
Q  228 ataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttat 327  Q
    |||||||| ||||||||  ||| |||||| | ||| ||| || | || |||||||||| || || |||| |||||||||||| |||| ||||||||||||    
T  17856827 ataaattacagacatttgtatagcttaaccgattatcaaaaatgtcttaattactcttggtcataaattcaaattttggtcttcacataattgattttat 17856926  T
Q  328 ataaatattctgttnnnnnnnntatttttaaaagcctcgttaaaaattttattttaagcctcttaatctgttgggtcggccct 410  Q
    ||||||||||| ||        |||||||| ||||| | |||||  |||| ||||| ||||||||||||||||||||||||||    
T  17856927 ataaatattctctt-gaaaaaatatttttacaagccacattaaattttttgttttaggcctcttaatctgttgggtcggccct 17857008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 23273883 - 23273825
Alignment:
Q  116 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgg 174  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23273883 tcagggccgtcctaagggccaagcaacccaaacaagggttttaggcctcaaaattttgg 23273825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 25382328 - 25382264
Alignment:
Q  272 cctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttatataaatatt 336  Q
    ||||||||||||||  ||||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  25382328 cctcaattactcttgataatgaattcaaattttagtcttcacaaaattgattttatataaatatt 25382264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 116 - 262
Target Start/End: Original strand, 12722309 - 12722456
Alignment:
Q  116 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnnc-ctctaaaaaattaatttggttataagta 214  Q
    ||||||||| ||||||||||||  ||| ||| ||| | ||||||||||||||||||||||||          || ||||||||||||||| |||||| ||    
T  12722309 tcagggccggtctaagggccaaataactcaagcaaagactttaggcctcaaaattttggatgaaaaaaaggtctttaaaaaattaatttgattataaata 12722408  T
Q  215 taatataagatagataaattaaagacatttacataacttaactggtta 262  Q
    || |||| ||||||| ||||| |||||||| |||| ||||| ||||||    
T  12722409 tattatatgatagatgaattatagacatttgcatagcttaattggtta 12722456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 42573266 - 42573197
Alignment:
Q  272 cctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 341  Q
    |||||||||||||| || |||||||||||||||| |||| | ||||||||||||||| ||||||| ||||    
T  42573266 cctcaattactcttggtcatgaatttaaattttgatctctataaaattgattttatacaaatattttgtt 42573197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 24580078 - 24580033
Alignment:
Q  127 ctaagggccaagcaacccaaacaagggctttaggcctcaaaatttt 172  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||||    
T  24580078 ctaagggccaagccacccaagcaagggctttagtcctcaaaatttt 24580033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 12520610 - 12520552
Alignment:
Q  116 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgg 174  Q
    |||||||||  ||||||||||| | |||||| |||||| |||||||||||| |||||||    
T  12520610 tcagggccggcctaagggccaaaccacccaagcaagggttttaggcctcaagattttgg 12520552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 186 - 498
Target Start/End: Complemental strand, 9363387 - 9363079
Alignment:
Q  186 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 285  Q
    |||||| |||||||||||||||||||||||| |||| || |||||||||| |  ||||| ||||||| |     || |||| ||||||||||||||||||    
T  9363387 cctctataaaattaatttggttataagtatattatacgacagataaattacaagcatttgcataactga-----ttgccaaaaaggcctcaattactctt 9363293  T
Q  286 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgttnnnnnnnntatttttaaaagcctcgttaaaaattttattttaag 385  Q
     || ||||||| |||||||| |||||||||||||||||||||||||||||||||||        |||||||||||||| | |||||| |||| |||||||    
T  9363292 ggtcatgaattcaaattttgatctccacaaaattgattttatataaatattctgttaaaaaaaatatttttaaaagccacattaaaatttttgttttaag 9363193  T
Q  386 cctcttaatctgttgggtcggccctacca-gttgaataatagcctatgagaacatagctttatttctatcatccaattttcttctcaactgttatcatcc 484  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  9363192 cctcttaatctgttgggtcggccctaccaagttaaataatagcctatgagaacatagcttgatttctatcatccaattttcttcttaactgttatcatcc 9363093  T
Q  485 aaatattctaaact 498  Q
    ||||||||||||||    
T  9363092 aaatattctaaact 9363079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 127 - 334
Target Start/End: Original strand, 27572457 - 27572666
Alignment:
Q  127 ctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagtataatataaga 224  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||          |||||||||||||||||||||||||| |||| |||| ||    
T  27572457 ctaagggccaagcaacccaagcaagggctttaggcctcaaaattttggatgaaaaaaaatgcctctaaaaaattaatttggttataattatattatatga 27572556  T
Q  225 tagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattt 324  Q
     |||||||||| ||| ||||  |||||||||||  ||||||| || || ||||||||||||  | ||||||| |||||| |||||||  ||||||||| |    
T  27572557 cagataaattatagatattttgataacttaactaattaccaaaaatgcttcaattactcttgttcatgaattcaaatttcggtctccgaaaaattgatat 27572656  T
Q  325 tatataaata 334  Q
    ||||||||||    
T  27572657 tatataaata 27572666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 116 - 336
Target Start/End: Complemental strand, 22851437 - 22851215
Alignment:
Q  116 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnnc--ctctaaaaaattaatttggttataagt 213  Q
    |||||||||  |||||||| ||||||||||| |||||||||||| |||||||||||||| ||        |  |||||||||||||||||||||||||||    
T  22851437 tcagggccggcctaagggctaagcaacccaagcaagggctttagacctcaaaattttgggtgaaaaaaaacgcctctaaaaaattaatttggttataagt 22851338  T
Q  214 ataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccac 313  Q
    |||  ||| ||||||||||  | |||||||| ||||  ||||||| ||||||| ||||| |||||||||||| || |||| |  ||||||||||||  ||    
T  22851337 atatcatatgatagataaacaacagacatttgcatagtttaactgattaccaaaaaggcttcaattactcttggtcatgattccaaattttggtctttac 22851238  T
Q  314 aaaattgattttatataaatatt 336  Q
    |||||| | ||||||||||||||    
T  22851237 aaaatttactttatataaatatt 22851215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 121 - 338
Target Start/End: Original strand, 30563537 - 30563756
Alignment:
Q  121 gccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagtataat 218  Q
    ||||| ||||||||||||||||||||  ||||| ||||||||||||||||| | | |          | ||||||||||||||||||||||||||||| |    
T  30563537 gccgacctaagggccaagcaacccaagtaagggttttaggcctcaaaatttcgtaagaaaaaaaaggcttctaaaaaattaatttggttataagtatatt 30563636  T
Q  219 ataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaat 318  Q
    ||| || |||||||||  ||||||||  ||| |||||||   |||||| ||||| |||||| |||||  | ||||||| | |||||||||||||||||||    
T  30563637 atatgacagataaattgtagacatttgtatagcttaactaactaccaaaaaggcttcaatttctcttgctcatgaattcagattttggtctccacaaaat 30563736  T
Q  319 tgattttatataaatattct 338  Q
    ||||||||||||||||||||    
T  30563737 tgattttatataaatattct 30563756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 127 - 337
Target Start/End: Complemental strand, 36193527 - 36193317
Alignment:
Q  127 ctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnncctctaaaaaattaatttggttataagtataatataagata 226  Q
    |||||||||||||||| ||| |||||| |||| | ||||| |||||||||         ||||||||||||||||||||||||||||||| ||||    |    
T  36193527 ctaagggccaagcaactcaagcaagggttttaagtctcaatattttggataaaaaaaagcctctaaaaaattaatttggttataagtatattatattgca 36193428  T
Q  227 gataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgatttta 326  Q
     || ||||| ||| |||| || | |||||||| ||| ||| ||| | ||||||||||||  | ||||||| |||||||| |||||||||||||||||| |    
T  36193427 aatgaattacagatatttgcacagcttaactgattatcaaaaagacttcaattactcttgatcatgaattcaaattttgatctccacaaaattgatttca 36193328  T
Q  327 tataaatattc 337  Q
    |||||||||||    
T  36193327 tataaatattc 36193317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 12885044 - 12885106
Alignment:
Q  115 ctcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatg 177  Q
    |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  12885044 ctcagggccggtctaagggtcaagcaacccaaacaagggttttaggcctcaaaattttggatg 12885106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 25505298 - 25505383
Alignment:
Q  251 cttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttatataaatatt 336  Q
    |||||||| ||||| | || || |||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  25505298 cttaactgattacctaaaaagcttcaattactcttggtcatgaattcaaattttgatctccacaaaattgattttatataaatatt 25505383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 325
Target Start/End: Original strand, 12885645 - 12885724
Alignment:
Q  246 cataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgatttt 325  Q
    |||| ||||| || ||||||| |||||||||||||||||| || | | ||| ||||||||| ||||||||||||||||||    
T  12885645 catagcttaattgattaccaaaaaggcctcaattactcttggtcaaggattcaaattttggactccacaaaattgatttt 12885724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 25505205 - 25505270
Alignment:
Q  190 taaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaa 255  Q
    ||||||||||||||||||||| ||||| |||| || |||||||||| |||||||| |||| |||||    
T  25505205 taaaaaattaatttggttataggtatattatatgacagataaattacagacatttgcatagcttaa 25505270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 19145910 - 19145954
Alignment:
Q  128 taagggccaagcaacccaaacaagggctttaggcctcaaaatttt 172  Q
    |||||| ||||| |||||||||||||||||||||||||| |||||    
T  19145910 taagggtcaagccacccaaacaagggctttaggcctcaagatttt 19145954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 23464244 - 23464333
Alignment:
Q  227 gataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaa 316  Q
    ||||||||| |||||||| |||||||||| || |||  |  |||| || |||||||||| || ||||||| ||||| | |||||||||||    
T  23464244 gataaattatagacatttgcataacttaattgattattagaaaggtcttaattactcttagtcatgaattcaaattcttgtctccacaaa 23464333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 118 - 341
Target Start/End: Complemental strand, 7739012 - 7738788
Alignment:
Q  118 agggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn-cctctaaaaaattaatttggttataagtata 216  Q
    |||||||| ||||||||||||||| | || ||||||||||| ||||||||||||||| ||         |||||||||||| ||||||||||||| ||||    
T  7739012 agggccgacctaagggccaagcaatcaaagcaagggctttaagcctcaaaattttgggtgaaaaaaaagcctctaaaaaatcaatttggttataaatata 7738913  T
Q  217 atataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaa 316  Q
     |||| || |||||||||| |||||||| |||| |||||||| |||| || ||| |||||||||||||| || ||||||| |||||||||| ||||||||    
T  7738912 ttatatgacagataaattacagacatttgcatagcttaactgattacgaaaaagacctcaattactcttggtcatgaattcaaattttggtttccacaaa 7738813  T
Q  317 attgattttatataaatattctgtt 341  Q
    |||||||||||||||||||| ||||    
T  7738812 attgattttatataaatattttgtt 7738788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 186 - 412
Target Start/End: Complemental strand, 24504519 - 24504294
Alignment:
Q  186 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 285  Q
    ||||||| ||| ||||||||||||||||||| |||| || | |||| ||| |||  ||| |||||||||  || ||||||| ||  | ||||||| ||||    
T  24504519 cctctaacaaactaatttggttataagtatattatatgacaaataagttatagatgtttgcataacttagttgattaccaaaaaaacatcaattattctt 24504420  T
Q  286 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgttnnnnnnnntatttttaaaagcctcgttaaaaattttattttaag 385  Q
     || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||        ||||||| || ||| | |||||  ||||  |||| |    
T  24504419 -gtcatgaattcaaattttggtctccacaaaattgattttatataaatattttgttaaaaaaaatatttttgaaggccacattaaattttttgatttatg 24504321  T
Q  386 cctcttaatctgttgggtcggccctac 412  Q
     |||||||||| |||||||||||||||    
T  24504320 tctcttaatctattgggtcggccctac 24504294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 190 - 341
Target Start/End: Complemental strand, 35759276 - 35759122
Alignment:
Q  190 taaaaaattaatttggttataagtataatataagatagataaattaaag---acatttacataacttaactggttaccaagaaggcctcaattactcttt 286  Q
    |||||||||||||| |||||||||||| |||| ||||||||||||| ||   | |||| |||| |||| ||| |||  || || | |||||||||||||     
T  35759276 taaaaaattaatttagttataagtatattatatgatagataaattatagtagatatttgcatatcttagctgtttatgaaaaaagtctcaattactcttc 35759177  T
Q  287 gtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 341  Q
       ||||||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  35759176 agcatgaattcaaattttggtctccacggaattgattttatataaatattctgtt 35759122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 341
Target Start/End: Complemental strand, 2746845 - 2746691
Alignment:
Q  187 ctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactcttt 286  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||||| | ||  |||| |||||||||| || ||| ||| || |  |||||| |||||     
T  2746845 ctctaaaaaattaattttgttataagtatattatatgatagataaatcataggtatttgcataacttaattgattatcaaaaatgtttcaattgctcttg 2746746  T
Q  287 gtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 341  Q
     | ||||||| |||||||| ||||  ||||||||| |||||||||||||| ||||    
T  2746745 atcatgaattcaaattttgttctcagcaaaattgaatttatataaatattttgtt 2746691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 19127126 - 19127081
Alignment:
Q  293 aatttaaattttggtctccacaaaattgattttatataaatattct 338  Q
    |||| |||| |||||||||| |||||||||||||||||||| ||||    
T  19127126 aattcaaatgttggtctccataaaattgattttatataaatcttct 19127081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 117 - 341
Target Start/End: Original strand, 3167298 - 3167522
Alignment:
Q  117 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagta 214  Q
    ||||||||  |||||||||||||||||||| |||||| |||||| |||||  |||||| ||          |||||||||||||||||||||||||||||    
T  3167298 cagggccggcctaagggccaagcaacccaagcaagggttttaggactcaa--ttttgggtgacaaaaaaggcctctaaaaaattaatttggttataagta 3167395  T
Q  215 taatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccaca 314  Q
    || ||||||| |||||||||| | | |||| |||| |||||||| ||||||| ||||| |||||||||||| || ||||||| |||||||||||||||||    
T  3167396 tattataagacagataaattatatatatttgcatagcttaactgattaccaaaaaggcatcaattactcttagtcatgaattcaaattttggtctccaca 3167495  T
Q  315 aaattgattttatataaatattctgtt 341  Q
    |||||||||||||||||||||| ||||    
T  3167496 aaattgattttatataaatattttgtt 3167522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 116 - 410
Target Start/End: Original strand, 4941606 - 4941904
Alignment:
Q  116 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagt 213  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||          ||||||||||||||||||||| |||| |    
T  4941606 tcaggaccggtctaagggccaagcaacccaaacaagggttttaggcctcaaaattttgggtgaaaaaaaaggcctctaaaaaattaatttggtcataatt 4941705  T
Q  214 ataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccac 313  Q
    ||| |||| || | |||||||| ||| ||||  ||| |||||||| |||| || || || ||||||| |||| || ||||||| ||||||| ||||||||    
T  4941706 atattatatgacaaataaattatagatatttgaatagcttaactgattacaaaaaatgcatcaattattcttggtcatgaattcaaattttagtctccac 4941805  T
Q  314 aaaattgattttatataaatattctgtt--nnnnnnnntatttttaaaagcctcgttaaaaattttattttaagcctcttaatctgttgggtcggccct 410  Q
    | |||||||||||||||| |||||||||          |||||||||||||| | |||||| ||||  |||| |||||||||||||||||| |||||||    
T  4941806 acaattgattttatataactattctgttgaaaaaaatatatttttaaaagccacattaaaatttttgctttaggcctcttaatctgttgggacggccct 4941904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 186 - 336
Target Start/End: Original strand, 46149933 - 46150083
Alignment:
Q  186 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 285  Q
    |||||||||||||||||||||||||| |||| ||||  | | ||||||||  ||||||| ||||||||||||| ||||||| ||| ||||||||||| ||    
T  46149933 cctctaaaaaattaatttggttataaatatattatataacaaataaattactgacatttgcataacttaactgattaccaaaaagacctcaattactttt 46150032  T
Q  286 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatatt 336  Q
     || ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  46150033 ggtcatgaattcaaattttggtctccacaaaattgattttctataaatatt 46150083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 186 - 337
Target Start/End: Complemental strand, 13269421 - 13269270
Alignment:
Q  186 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 285  Q
    |||||||||||||||||||||| |||||||| |||| || |||||||||| | | ||||  ||| |||||||| ||||||| || ||||| |||||||||    
T  13269421 cctctaaaaaattaatttggttgtaagtatattatatgacagataaattacatatatttgtatatcttaactgattaccaaaaatgcctctattactctt 13269322  T
Q  286 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatattc 337  Q
     || ||||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  13269321 cgtcatgaattcaaatttttgtctccacacaattgattttatataaatattc 13269270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 117 - 341
Target Start/End: Complemental strand, 21486111 - 21485885
Alignment:
Q  117 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagta 214  Q
    |||||||| |||||||| |||||||| |||  ||||||||||||||||||||||||||  |          ||||||||||||||||||||||||| | |    
T  21486111 cagggccggtctaagggtcaagcaactcaagtaagggctttaggcctcaaaattttgggcggaaaaaaaggcctctaaaaaattaatttggttatacgga 21486012  T
Q  215 taatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccaca 314  Q
    || |||  ||||||||||||| |||||||| ||||||||||||| ||||| | || | || ||||   |||  | ||||||| || |||||||||||| |    
T  21486011 tattatgtgatagataaattatagacatttgcataacttaactgattacctaaaatgtctgaatttgccttgatcatgaattcaagttttggtctccata 21485912  T
Q  315 aaattgattttatataaatattctgtt 341  Q
    |||||||||||||||||||||||||||    
T  21485911 aaattgattttatataaatattctgtt 21485885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 130 - 399
Target Start/End: Original strand, 40777901 - 40778172
Alignment:
Q  130 agggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn-cctctaaaaaattaatttggttataagtataatataagataga 228  Q
    ||||||||||||||||| |||| |||||||||| ||||||||| | ||         |||||||||| |||||||||||||||||||| |||| || |||    
T  40777901 agggccaagcaacccaagcaagagctttaggccacaaaattttaggtgaaaaaaaggcctctaaaaatttaatttggttataagtatattatatgacaga 40778000  T
Q  229 taaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttata 328  Q
    ||||||| ||| ||||| |||  ||||||| ||||||| || | ||||||||| |||  | ||||||| |||||||||| || |||||||||| ||||||    
T  40778001 taaattatagatatttatatagtttaactgattaccaaaaaagtctcaattacacttgatcatgaattcaaattttggtatctacaaaattgactttata 40778100  T
Q  329 taaatattctgtt-nnnnnnnntatttttaaaagcctcgttaaaaattttattttaagcctcttaatctgtt 399  Q
    |||||||| ||||         |||||||||| ||| | ||||||| ||| ||||||||||| |||||||||    
T  40778101 taaatattttgttaaataaaaatatttttaaaggccacattaaaaaatttgttttaagcctcctaatctgtt 40778172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 116 - 336
Target Start/End: Complemental strand, 8221887 - 8221669
Alignment:
Q  116 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnncctctaaaaaattaatttggttataagtat 215  Q
    |||||||||  |||||||||||||||||||| |||| |||||||||||||||||||| | ||           ||  |||||||||||||||||||||||    
T  8221887 tcagggccggcctaagggccaagcaacccaagcaagtgctttaggcctcaaaattttaggtgaaaaacaaaacctctaaaattaatttggttataagtat 8221788  T
Q  216 aatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaa 315  Q
    | |||| || ||||||| || |||||||| || |||||| ||| ||||||| ||||| |||||||||||  ||   ||||| ||||||||||||  ||||    
T  8221787 attatatgacagataaagtacagacatttgcacaacttacctgattaccaaaaaggcatcaattactctcggt--cgaattcaaattttggtcttaacaa 8221690  T
Q  316 aattgattttatataaatatt 336  Q
    |||||||||| ||||||||||    
T  8221689 aattgattttgtataaatatt 8221669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 186 - 327
Target Start/End: Original strand, 23288603 - 23288744
Alignment:
Q  186 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 285  Q
    ||||||||||||||||||  |||||| |||| |||| ||||||||||||| |||||| | |||||| ||| || |||| || |||  |||||||||||||    
T  23288603 cctctaaaaaattaatttaattataaatatattatatgatagataaattacagacatctccataacataattgattactaaaaagaactcaattactctt 23288702  T
Q  286 tgtaatgaatttaaattttggtctccacaaaattgattttat 327  Q
      | ||||||| |||||||| |||| ||||||| ||||||||    
T  23288703 gatcatgaattcaaattttgatctctacaaaatcgattttat 23288744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 341
Target Start/End: Complemental strand, 34771364 - 34771275
Alignment:
Q  252 ttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 341  Q
    ||||||| ||||||| ||| |  ||||||||||| || ||||||| |||||||| | | |||||||||| ||||||||||||||| ||||    
T  34771364 ttaactgattaccaaaaagccaccaattactcttggtcatgaattcaaattttgttatgcacaaaattggttttatataaatattatgtt 34771275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 51879054 - 51879099
Alignment:
Q  127 ctaagggccaagcaacccaaacaagggctttaggcctcaaaatttt 172  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||    
T  51879054 ctaagggccaagccacccaagcaagggctttaggcctcaaaatttt 51879099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 117 - 341
Target Start/End: Original strand, 36076293 - 36076520
Alignment:
Q  117 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn---cctctaaaaaattaatttggttataagt 213  Q
    |||||||| |||||| |||||||||||||| |||||| |||||||| ||||||||||  ||           |||||||||| ||||||||||||||| |    
T  36076293 cagggccggtctaagagccaagcaacccaagcaagggttttaggccacaaaattttgagtgaataaaaaaggcctctaaaaatttaatttggttataaat 36076392  T
Q  214 ataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccac 313  Q
    ||| | || |||||||||| || |||||||| ||||||||||||| ||| ||||||||||||| |||||||| ||  |||||| |||||||| |||||||    
T  36076393 atagtgtatgatagataaactacagacatttgcataacttaactgattatcaagaaggcctcagttactcttggtcttgaattcaaattttgatctccac 36076492  T
Q  314 aaaattgattttatataaatattctgtt 341  Q
    | ||||||||||||||||||||| ||||    
T  36076493 acaattgattttatataaatattatgtt 36076520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 190 - 410
Target Start/End: Original strand, 20506600 - 20506819
Alignment:
Q  190 taaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgta 289  Q
    ||||||||||||||||||||||||||| |||  || |||||||||| ||||||||  |||||||||||  ||||||| || | ||| ||||||||| ||     
T  20506600 taaaaaattaatttggttataagtatattatgtgacagataaattacagacatttgtataacttaacttattaccaaaaaagtctctattactctt-gtc 20506698  T
Q  290 atgaatttaaattttggtctccacaaaattgattttatataaatattctgttnnnnnnnntatttttaaaagcctcgttaaaaattttattttaagcctc 389  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||        |||||||||| | | | |||||| ||||  |||| |||||    
T  20506699 atgaattcaaattttggtctccacaaaattgattttatataaatattctgtt-aaaaaaatatttttaaaggtcacattaaaatttttgctttatgcctc 20506797  T
Q  390 ttaa-tctgttgggtcggccct 410  Q
    |||| |||||||||||||||||    
T  20506798 ttaattctgttgggtcggccct 20506819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 132 - 341
Target Start/End: Complemental strand, 37606090 - 37605879
Alignment:
Q  132 ggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagtataatataagatagat 229  Q
    ||||||||||||||||||||||  ||||| ||||||||||||| ||          |||||||||||||||||| |||||||||||  |||| || ||||    
T  37606090 ggccaagcaacccaaacaagggtcttaggtctcaaaattttgggtgaaaacaaaggcctctaaaaaattaatttagttataagtatgttatatgacagat 37605991  T
Q  230 aaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttatat 329  Q
    |||||| |  ||||| |||| |||||||| ||||||| ||| | |||||||||||| || ||||| | ||||||| ||||||||||||||||||||||||    
T  37605990 aaattacaagcatttgcatagcttaactgattaccaaaaagacttcaattactcttagtcatgaactcaaattttagtctccacaaaattgattttatat 37605891  T
Q  330 aaatattctgtt 341  Q
    ||||||||||||    
T  37605890 aaatattctgtt 37605879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 130 - 341
Target Start/End: Complemental strand, 36521091 - 36520881
Alignment:
Q  130 agggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn-cctctaaaaaattaatttggttataagtataatataagataga 228  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||||||         || |||||||||||||| |||||||| |||| |||| || | |    
T  36521091 agggccaagcaacccaagcaagtgctttaagcctcaaaattttggatggaaaaaattcccctaaaaaattaattgggttataattatattatatgaca-a 36520993  T
Q  229 taaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttata 328  Q
    ||||||| ||| |||| ||||||||||||  ||| ||| | |||||  ||||||||| || ||||||| |||||||||||||||||||||||||||||||    
T  36520992 taaattacagatatttgcataacttaactaattatcaaaacggcctttattactctt-gtcatgaattcaaattttggtctccacaaaattgattttata 36520894  T
Q  329 taaatattctgtt 341  Q
    |||||||| ||||    
T  36520893 taaatattatgtt 36520881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 187 - 326
Target Start/End: Original strand, 8267385 - 8267524
Alignment:
Q  187 ctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactcttt 286  Q
    |||||||||||||||||| ||||||||||| |||| || |||||||||  |||||||| |||| |||||||| ||||||| || || ||||||||||||     
T  8267385 ctctaaaaaattaatttgattataagtatattatatgagagataaattccagacatttgcatagcttaactgattaccaaaaatgcatcaattactcttg 8267484  T
Q  287 gtaatgaatttaaattttggtctccacaaaattgatttta 326  Q
    || ||||||| |||||| ||||||||||||||||||||||    
T  8267485 gtcatgaattcaaatttaggtctccacaaaattgatttta 8267524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 332
Target Start/End: Complemental strand, 11033251 - 11033109
Alignment:
Q  190 taaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgta 289  Q
    ||||||||||||||||||||||||||| |||| |||||||||| || |||||||| ||||  |||| || || |||| ||  ||||||||||||||  |     
T  11033251 taaaaaattaatttggttataagtatattatatgatagataaactacagacatttgcatagtttaattgatttccaaaaatacctcaattactcttgatc 11033152  T
Q  290 atgaatttaaattttggtctccacaaaattgattttatataaa 332  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  11033151 atgaattcaaattttggtctccacaaaattgattttatataaa 11033109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 115 - 335
Target Start/End: Original strand, 20511684 - 20511904
Alignment:
Q  115 ctcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnncctctaaaaaattaatttggttataagta 214  Q
    ||||||||||  ||||||| ||| |||||||||||||||||||||| |||||||||||||||         | |||||||| ||||||||||||||| ||    
T  20511684 ctcagggccgccctaagggtcaaacaacccaaacaagggctttaggtctcaaaattttggataaaaaaaggcatctaaaaatttaatttggttataaata 20511783  T
Q  215 taatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccaca 314  Q
    || |||  || ||| |||||| ||||||| ||||||| || ||| ||||||| ||| |||||||||||| |  | | ||||| ||||||| |||||||||    
T  20511784 tattatctgacagaaaaattacagacattgacataacatatctgattaccaaaaagacctcaattactcctgatcaagaattcaaattttagtctccaca 20511883  T
Q  315 aaattgattttatataaatat 335  Q
    ||||| ||| |||||| ||||    
T  20511884 aaattaattatatatatatat 20511904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 186 - 341
Target Start/End: Original strand, 39303422 - 39303577
Alignment:
Q  186 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 285  Q
    |||||||||||||||||||||||||| |||| ||||  | |||||||||| | |||||| ||||| |||| || ||||||| || |  |||||||||||     
T  39303422 cctctaaaaaattaatttggttataaatatattatataacagataaattacacacatttgcataaattaattgattaccaaaaatgtatcaattactcta 39303521  T
Q  286 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 341  Q
     || || |||| |||||||| ||||||||||||||||||| ||| ||| |||||||    
T  39303522 ggtcatcaattcaaattttgatctccacaaaattgattttttatgaatgttctgtt 39303577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 190 - 408
Target Start/End: Original strand, 13536885 - 13537099
Alignment:
Q  190 taaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgta 289  Q
    ||||||||||||||||| ||||||||| |||| || |||||||||| ||||||||  ||| ||||||||   | ||| ||||  | |||||||| | ||     
T  13536885 taaaaaattaatttggtcataagtatattatatgacagataaattacagacatttgaatagcttaactg---atcaaaaaggttttaattactcatggtc 13536981  T
Q  290 atgaatttaaattttggtctccacaaaattgattttatataaatattctgttnnnnnnnntatttttaaaagcctcgttaaaaattttattttaagcctc 389  Q
    ||||||| ||||||||||||||||  ||||| ||||||||||||||||| ||        || ||| ||| ||| | |||||  ||||  ||||||||||    
T  13536982 atgaattcaaattttggtctccacgcaattgcttttatataaatattctatt-aaaaaaataatttcaaaggccacattaaattttttgatttaagcctc 13537080  T
Q  390 ttaatctgttgggtcggcc 408  Q
    |||||||||||||||||||    
T  13537081 ttaatctgttgggtcggcc 13537099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 341
Target Start/End: Complemental strand, 21136473 - 21136320
Alignment:
Q  187 ctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactcttt 286  Q
    |||||||||||||||||||||||||| ||| |||| || |||||||||| |||||||| |||  ||||||||   ||||| ||  |||||||||| |||     
T  21136473 ctctaaaaaattaatttggttataagaatattatatgacagataaattatagacatttgcatggcttaactgacaaccaa-aaatcctcaattacgctta 21136375  T
Q  287 gtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 341  Q
        |||||| ||||  || |||||| ||||||||| || |||||||||||||||    
T  21136374 tatgtgaattgaaataatgatctccataaaattgatattttataaatattctgtt 21136320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 6606255 - 6606310
Alignment:
Q  117 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaatttt 172  Q
    ||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||    
T  6606255 cagggccggcctaagggccaagccacccaagcaagggctttaggcctcaaaatttt 6606310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 13511216 - 13511161
Alignment:
Q  117 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaatttt 172  Q
    ||||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||    
T  13511216 cagggccgacctaagggtcaagccacccaagcaagggctttaggcctcaaaatttt 13511161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 336
Target Start/End: Original strand, 42074781 - 42074810
Alignment:
Q  307 tctccacaaaattgattttatataaatatt 336  Q
    ||||||||||||||||||||||||||||||    
T  42074781 tctccacaaaattgattttatataaatatt 42074810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 11033314 - 11033270
Alignment:
Q  128 taagggccaagcaacccaaacaagggctttaggcctcaaaatttt 172  Q
    |||||| ||||||| |||| |||||| ||||||||||||||||||    
T  11033314 taagggtcaagcaatccaagcaagggttttaggcctcaaaatttt 11033270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 128 - 341
Target Start/End: Complemental strand, 24209417 - 24209202
Alignment:
Q  128 taagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagtataatataagat 225  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||| |          ||||||||||||||||||||||||||||||| ||||  ||    
T  24209417 taagggccaagcaacccaagcaagggctataggcctcaaaattttggacgaaaaaaaagacctctaaaaaattaatttggttataagtatattatatcat 24209318  T
Q  226 agataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgatttt 325  Q
    |||||||||| |  ||||| |||||||||| || |||| || || || ||||||||| || || ||||||| |||||||  |||| ||||||| ||||||    
T  24209317 agataaattacatgcatttgcataacttaattgattacaaaaaatgcttcaattactattggtcatgaattcaaattttaatctcaacaaaatagatttt 24209218  T
Q  326 atataaatattctgtt 341  Q
    ||||||||||||||||    
T  24209217 atataaatattctgtt 24209202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 338
Target Start/End: Original strand, 33105997 - 33106107
Alignment:
Q  228 ataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttat 327  Q
    |||||||| |||||||| |||| |||||||| ||||||| || ||||||||||||||  || ||||||| ||||||||||||||||||||||||||||||    
T  33105997 ataaattacagacatttgcatagcttaactgattaccaaaaatgcctcaattactctaggtcatgaattcaaattttggtctccacaaaattgattttat 33106096  T
Q  328 ataaatattct 338  Q
    ||||| |||||    
T  33106097 ataaacattct 33106107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 322
Target Start/End: Complemental strand, 2603974 - 2603791
Alignment:
Q  139 caacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnncctctaaaaaattaatttggttataagtataatataagatagataaattaaag 238  Q
    |||||||| ||||||||||| ||||||||||||||| ||        |||||||| |||||||||||||||||||||| ||||  | |||||||||| ||    
T  2603974 caacccaagcaagggctttaagcctcaaaattttgggtgaaaaaagacctctaaataattaatttggttataagtatattatataacagataaattacag 2603875  T
Q  239 acatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgat 322  Q
    ||||||  |||||| || || |||  || ||| |||| |||||| ||  | ||||||| |||||| ||||||||||||||||||    
T  2603874 acatttgtataactcaattgattattaaaaagacctctattacttttgatcatgaattcaaatttcggtctccacaaaattgat 2603791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 127 - 410
Target Start/End: Complemental strand, 3861128 - 3860843
Alignment:
Q  127 ctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnnc--ctctaaaaaattaatttggttataagtataatataaga 224  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||||| |            || |||||||||||||| ||||||| |||| |||| ||    
T  3861128 ctaagggccaagcaacccaaacaagggttttaggtttcaaaattttggctaaaaaaaaaaaactataaaaaattaatttagttataattatattatatga 3861029  T
Q  225 tagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattt 324  Q
     | |||||||| ||| ||||| |||  ||||||| ||| ||| || |  |||||||||||   | ||||||||||||||||||| |||||||||||||||    
T  3861028 catataaattacagatatttatatagattaactgattatcaaaaatggatcaattactctagatcatgaatttaaattttggtc-ccacaaaattgattt 3860930  T
Q  325 tatataaatattctgtt-nnnnnnnntatttttaaaagcctcgttaaaaattttattttaagcctcttaatctgttgggtcggccct 410  Q
    ||||||||| |||||||         || |||||||  || | |||||| |||| |||||||||||||||||||||||  |||||||    
T  3860929 tatataaatgttctgttgaaaaaatatacttttaaagaccacattaaaatttttgttttaagcctcttaatctgttggaccggccct 3860843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 337
Target Start/End: Original strand, 24585077 - 24585293
Alignment:
Q  121 gccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn-cctctaaaaaattaatttggttataagtataata 219  Q
    |||| |||||||||||||||| |||| ||  || ||||||||| |||||||||| ||         |||||||||||||||| | |||||||||||| ||    
T  24585077 gccggtctaagggccaagcaatccaagcagaggttttaggccttaaaattttgggtgaaaaaaatgcctctaaaaaattaatctagttataagtatatta 24585176  T
Q  220 taagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctcc-acaaaat 318  Q
    || || |||||||||  | | ||||||||||| |||||  ||| ||| || || | || ||||||| || ||||||| || ||||||||||| | |||||    
T  24585177 tatgagagataaatt--acaaatttacataacataactaattaacaaaaatgctttaactactcttggtcatgaattcaagttttggtctccaaaaaaat 24585274  T
Q  319 tgattttatataaatattc 337  Q
    | |||||||||||||||||    
T  24585275 taattttatataaatattc 24585293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 15494243 - 15494300
Alignment:
Q  117 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgg 174  Q
    ||||||||  ||||||||||||| ||| || | ||||||||||||||||| |||||||    
T  15494243 cagggccggcctaagggccaagccaccaaagcgagggctttaggcctcaagattttgg 15494300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 404
Target Start/End: Original strand, 33108042 - 33108079
Alignment:
Q  367 ttaaaaattttattttaagcctcttaatctgttgggtc 404  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  33108042 ttaaaatttttattttaagcctcttaatatgttgggtc 33108079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 332
Target Start/End: Complemental strand, 41732398 - 41732252
Alignment:
Q  186 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 285  Q
    |||||||||| ||||| |||||||||||||| |||| ||||||||||||| |||||||| |||||  |||||| |||| || || |||| ||||||||||    
T  41732398 cctctaaaaatttaatatggttataagtatattatatgatagataaattacagacatttgcataatataactgattactaaaaatgcctaaattactctt 41732299  T
Q  286 tgtaatgaatttaaattttggtctccacaaaattgattttatataaa 332  Q
     || ||||||| |||||||| |||||| |||||||||||||||||||    
T  41732298 ggtcatgaattcaaattttgatctccataaaattgattttatataaa 41732252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 206 - 338
Target Start/End: Complemental strand, 37941359 - 37941227
Alignment:
Q  206 ttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttg 305  Q
    ||||||||||| |||| ||||||||||||  ||||||||  |||||||||||   ||  || ||| |||||||||||||| || ||||||| ||||||||    
T  37941359 ttataagtatattatatgatagataaattgcagacatttgtataacttaactcactataaaaaagacctcaattactcttggtcatgaattcaaattttg 37941260  T
Q  306 gtctccacaaaattgattttatataaatattct 338  Q
    ||||| |||||||||||||||||||||||||||    
T  37941259 gtctcaacaaaattgattttatataaatattct 37941227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 28440819 - 28440919
Alignment:
Q  241 atttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgt 340  Q
    |||| |||| |||||||| ||||||| ||||| |||||||||||| || || |||| |||||||  ||||||||||||||||||||||||||||||||||    
T  28440819 atttgcataccttaactgattaccaaaaaggcttcaattactcttggtcataaattcaaattttaatctccacaaaattgattttatataaatattctgt 28440918  T
Q  341 t 341  Q
    |    
T  28440919 t 28440919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 43585727 - 43585682
Alignment:
Q  127 ctaagggccaagcaacccaaacaagggctttaggcctcaaaatttt 172  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||    
T  43585727 ctaagggccaagccacccaagcaagggctttaggcctcaaaatttt 43585682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 19527955 - 19528014
Alignment:
Q  116 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgga 175  Q
    |||||||||  ||||| |||||||||||||| ||| | ||||||||||||||||||||||    
T  19527955 tcagggccggcctaagtgccaagcaacccaatcaatgactttaggcctcaaaattttgga 19528014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 3956191 - 3956134
Alignment:
Q  116 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttg 173  Q
    |||||||||| | |||||| |||| |||||| ||||||||||||||||| | ||||||    
T  3956191 tcagggccgacccaagggctaagccacccaagcaagggctttaggcctccagattttg 3956134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 117 - 341
Target Start/End: Complemental strand, 52033033 - 52032804
Alignment:
Q  117 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn-cctctaaaaaattaatttggttataagtat 215  Q
    |||||||| ||||||||||||||||||||| |||||| |||||||| || |||||||||||         |||| ||| ||||||||| |||||||||||    
T  52033033 cagggccggtctaagggccaagcaacccaagcaagggttttaggccacacaattttggatgaaaaaaaggcctcgaaagaattaattttgttataagtat 52032934  T
Q  216 aatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattt---tggtctcca 312  Q
    | |||| || | |||||||| |||||||| |||| ||||| |  ||||||| || | ||||||| ||||| || ||||||| ||||||   |||||||||    
T  52032933 attatatgacatataaattatagacatttgcatagcttaaattattaccaaaaaagtctcaattgctcttggtcatgaattcaaattttggtggtctcca 52032834  T
Q  313 caaaattga-ttttatataaatattctgtt 341  Q
    ||||||||| |||||| |||||||| ||||    
T  52032833 caaaattgatttttatttaaatattttgtt 52032804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 190 - 341
Target Start/End: Original strand, 26536389 - 26536540
Alignment:
Q  190 taaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgta 289  Q
    ||||||||||||||||||||||||||| |||   | ||||||| || |||||||   ||| |||||||| ||| ||| ||  ||||||||||| || ||     
T  26536389 taaaaaattaatttggttataagtatattatcttacagataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 26536488  T
Q  290 atgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 341  Q
    || |||| || |||||||||||||||||||||||||||||||||||||||||    
T  26536489 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 26536540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 218 - 341
Target Start/End: Original strand, 29019883 - 29020005
Alignment:
Q  218 tataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaa 317  Q
    |||| ||||||| ||||| ||||||||  ||||| |||||| |||| || ||  |||||||||||||| || ||||||| |||||| ||||||| |||||    
T  29019883 tatatgatagatgaattacagacatttgtataacataactgattactaaaaaa-cctcaattactcttggtcatgaattcaaatttcggtctcctcaaaa 29019981  T
Q  318 ttgattttatataaatattctgtt 341  Q
    ||||||||||||||||||||||||    
T  29019982 ttgattttatataaatattctgtt 29020005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 186 - 336
Target Start/End: Complemental strand, 26104596 - 26104446
Alignment:
Q  186 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 285  Q
    |||||||||||||||||| ||||||| |||| |||| || | |||||||| |||| ||| |||| ||||| ||  ||  || ||| | ||||||||||||    
T  26104596 cctctaaaaaattaatttagttataattatattatatgacaaataaattagagacgtttgcatagcttaattgaatataaaaaagacatcaattactctt 26104497  T
Q  286 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatatt 336  Q
     || ||||||| |||||||  |||||||| |||||||||||||||| ||||    
T  26104496 ggtcatgaattcaaattttaatctccacacaattgattttatataactatt 26104446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 53461843 - 53461796
Alignment:
Q  127 ctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgg 174  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||||||    
T  53461843 ctaagggccaagcaacctacacaagggttttaggcctcaaaattttgg 53461796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 47042663 - 47042719
Alignment:
Q  118 agggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgg 174  Q
    |||||||  ||||||||||||| |||||||||| |||||||||| |||| |||||||    
T  47042663 agggccggcctaagggccaagccacccaaacaatggctttaggcatcaagattttgg 47042719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 21795460 - 21795507
Alignment:
Q  127 ctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgg 174  Q
    ||||||||||||| | |||| ||||||||||||||||||| |||||||    
T  21795460 ctaagggccaagccatccaagcaagggctttaggcctcaagattttgg 21795507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 33440755 - 33440712
Alignment:
Q  129 aagggccaagcaacccaaacaagggctttaggcctcaaaatttt 172  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||    
T  33440755 aagggccaagccacccaagcaagggctttaggcctcaaattttt 33440712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 328
Target Start/End: Complemental strand, 53461702 - 53461648
Alignment:
Q  274 tcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttata 328  Q
    ||||||| |||| || || |||| |||||||||| ||||||||||||||||||||    
T  53461702 tcaattattcttggtcataaattcaaattttggtatccacaaaattgattttata 53461648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 186 - 341
Target Start/End: Complemental strand, 7637 - 7483
Alignment:
Q  186 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 285  Q
    ||||||||||||||||||||||| ||| ||| |||| ||||||||||||| |||||||| |||| |||||||| | ||||| || ||||||||||| |||    
T  7637 cctctaaaaaattaatttggttagaagcatattatatgatagataaattatagacattttcatagcttaactgataaccaa-aaagcctcaattacgctt 7539  T
Q  286 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 341  Q
         |||||| ||||||||||||| | ||||||||| || |||| ||||||||||    
T  7538 atctgtgaattgaaattttggtctctataaaattgatattttatatatattctgtt 7483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 2298 - 2354
Alignment:
Q  272 cctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttata 328  Q
    |||||||||||||| || ||||||| |||||||| |||| | |||||||||||||||    
T  2298 cctcaattactcttggtcatgaattcaaattttgatctctataaaattgattttata 2354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University