View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1515_low_7 (Length: 389)
Name: NF1515_low_7
Description: NF1515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1515_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 9423563 - 9423919
Alignment:
| Q |
17 |
agtaacattgttcaagctttgattcagtggaatcatccatgaagatgcagggtaattctgcaatggttttgacctattatgttcggattcggataactcg |
116 |
Q |
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| T |
9423563 |
agtaacattgttcaagctttgattcagtggaatcatccatgaagatgcagagtaattctgcaatggttttgacctattatgttcggattcggataactcg |
9423662 |
T |
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| Q |
117 |
tttcctcgagtataaccgtttgtcagagaagatagacataatgatgattcttcatccccattttctctacaatttttagcatttgcatcaacatttctct |
216 |
Q |
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| T |
9423663 |
tttcctcgagtataaccgtttgtcagagaagatagacataatgatgattcttcatccccattttctctacaattgttagcatttgcatcaacatttctct |
9423762 |
T |
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| Q |
217 |
tgtgtttgttaggattaaagatcgaatcgttagattcattttccggaccaaattttaggacaataccattattatttgagcacctgaaaaccgcagcaga |
316 |
Q |
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| T |
9423763 |
tgtggttgttaggattaaagatcgaatcgttagattcattttccggaccaaattttaggacaataccattattatttgagcacctgaaaaccgcagcaga |
9423862 |
T |
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| Q |
317 |
ttcggtagaagaatcgttgctttcaaaattggaggttgaaattccaccggaagctac |
373 |
Q |
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| T |
9423863 |
ttcggtagaagaatcgttgctttcaaaatttgaggttgaaattccaccggaagctac |
9423919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 9430855 - 9431175
Alignment:
| Q |
11 |
cataggagtaacattgttcaagctttgattcagtggaatcatccatgaagatgcagggtaattctgcaatggttttgacctattatgttcggattcggat |
110 |
Q |
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| T |
9430855 |
catagaagtaacattgttccatctttgattcattggaattatccatgaagatgcagggtagctctgcataggtttagacctattctgttcggattcgaat |
9430954 |
T |
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| Q |
111 |
aactcgtttcctcgagtataaccgtttgtcagagaagatagacataatgatgattcttcatccccattttctctacaatttttagcatttgcatcaacat |
210 |
Q |
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| T |
9430955 |
aactcgtttcctcgagtatgaccgtttgtcacagacgatacacataacgatgtttcttcctctccattttctctacaattattaccacttgcatcaacat |
9431054 |
T |
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| Q |
211 |
ttctcttgtgtttgttaggattaaagatcgaatcgttagatt------------cattttccggaccaaattttaggacaataccattattatttgagca |
298 |
Q |
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| T |
9431055 |
gtctcctgttgttcataagattaagcattgaacctttggattcatcgagcgaggcattttcccgaccaaattttaggacaataccattatcatttgaaca |
9431154 |
T |
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| Q |
299 |
cctgaaaaccgcagcagattc |
319 |
Q |
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| T |
9431155 |
cctaaaaactgcagcagattc |
9431175 |
T |
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