View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1515_low_8 (Length: 365)
Name: NF1515_low_8
Description: NF1515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1515_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 27888434 - 27888771
Alignment:
| Q |
10 |
attattctgcaaaagaatattgtccaacaaagagcaacactcaactacttgctcctctttcaaagtaaaaagcctctttctccaccttcaagtataaacc |
109 |
Q |
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| T |
27888434 |
attatcctgcaaaagaatattgtccagcaaagagcaacactcaactacttactcctctttcaaagtaaaaagcctctttctccaccttcaagtataaacc |
27888533 |
T |
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| Q |
110 |
tcaacccccaacctaactccccatctcatctactgaaatattactattaagataatggctaaaaagaaaactaaatataaaattccttcttctagacaag |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
27888534 |
tcaacccccaacctaactccccatctcatctactgaaatattactattaagataatggctaaaaagaaaactaaatataaaattccttcttctgggcaag |
27888633 |
T |
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| Q |
210 |
gattgtttcaaaaggaagaaatctcatcattgccaattctacgcgccaaactttcctcaaaccaaccttctttgctcacatgaacgtcttttctacccac |
309 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27888634 |
gattgtttcaaaaggaagaaatttcatcattgccaattctacgcgccaaactttcctcaaaccaacctcctttgctcacatgaacgtcttttctacccac |
27888733 |
T |
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| Q |
310 |
ataannnnnnncaccatctagacgcctcagaacctcct |
347 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
27888734 |
ataatttttttcaccatctagacgcctcagaacctcct |
27888771 |
T |
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