View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15160_high_14 (Length: 240)
Name: NF15160_high_14
Description: NF15160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15160_high_14 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 14460560 - 14460339
Alignment:
| Q |
19 |
gtacaatttaatgtagtggatatgtcatcgatttcatttttatgttgagtgaataatctaaatcttggatcgcattggattannnnnnnatttatatttc |
118 |
Q |
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| T |
14460560 |
gtacaatttaatgtagtgaatatgtcatcgatttcttttttatgttgagtgaataatctaaatcttggatcgcattggattatttttttatttatatttc |
14460461 |
T |
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| Q |
119 |
tcactgaaaaccccaatggggtgcctgtgctattatgtttcttcatgcttttatctatgtcgttttgatgtatatatttttaattatttttcttcaatga |
218 |
Q |
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| T |
14460460 |
tcaccgaaaaccccaatggggtgcctgtgctattatgtttcttcatgcttttatctatgtcgttttgatgtatatatttttaattatttttcatcaatga |
14460361 |
T |
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| Q |
219 |
ttgttgctcgattatagttttt |
240 |
Q |
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| T |
14460360 |
ttgttgctcgattatagttttt |
14460339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 14468737 - 14468524
Alignment:
| Q |
20 |
tacaatttaatgtagtggatatgtcatcgatttcatttttatgttgagtgaataatctaaatcttggatcgcattggattannnnnnnatttatatttct |
119 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| |
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| T |
14468737 |
tacaatttaatgtagtggatatgccatcaatttcatttttatgttgagtgaataatctaaatcttagatcacattggattattt----atttatatttct |
14468642 |
T |
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| Q |
120 |
cactgaaaaccccaatggggtgcctgtgctatt-atgtttcttcatgcttttatctatgtcgttttgatgtatatatttttaattatttttcttcaatga |
218 |
Q |
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| T |
14468641 |
cacataaaacacgaatggg-tgcctgtgctatttatgtttcttcatgcttttatctatgtcgttttgatgtata---ttttaattatttttgttcaatga |
14468546 |
T |
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| Q |
219 |
ttgttgctcgattatagttttt |
240 |
Q |
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| T |
14468545 |
ttgttgctggattctagttttt |
14468524 |
T |
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