View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15160_high_2 (Length: 539)
Name: NF15160_high_2
Description: NF15160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15160_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 53660508 - 53660244
Alignment:
| Q |
20 |
ctgtgtatatatataagcattgccatagggttggttacttctaaatttttaaatgtataacctacaggtttggatgaggaagtttaagacgaacctagac |
119 |
Q |
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| T |
53660508 |
ctgtgtatatatataagcattgccatagggttggttacttctaaattttaaaatgtataacctacaggtttggatgaggaagtttaagacgaacctagac |
53660409 |
T |
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| Q |
120 |
aagttggaatgagaatgacggcttttatgctgaaaattgaataattggaactgaatatctattaaagctaacatgaattttagnnnnnnncgttgcttat |
219 |
Q |
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| T |
53660408 |
tagttggaatgagaatgacggcttttatgctgaaaattgaataattggaactgaatatctattaaagctaacatgaattttagtttttttcgttgcttat |
53660309 |
T |
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| Q |
220 |
acgctttgcaaatagataataacaattttgttccctattttataaacctcaccatctctcttgtt |
284 |
Q |
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| T |
53660308 |
acgctttgcaaatagataataacaattttgttccctattttataaacctcaccctctctcttgtt |
53660244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 281 - 529
Target Start/End: Complemental strand, 53660208 - 53659959
Alignment:
| Q |
281 |
tgttcgtcctaacgaaataagtatctcactgannnnnnngtgacataggtcacattgaccaaatcgcgtaaacttttgtgtcttgttctttcctcttttt |
380 |
Q |
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| T |
53660208 |
tgttcgtcctaacgaaataagtatctcactgatttctttgtgacgtaggtcacattgaccaaatcgcgtaaacttttgtgtcttgttctttcctcttttt |
53660109 |
T |
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| Q |
381 |
cctttgatcttccaacttgtgtgtggtttattcttgtctttg-tcaaaacaattacaactaatttgtgatctctcttacatatgaaaggttattgagcat |
479 |
Q |
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| T |
53660108 |
cctttgatcttccgacttgtgtgtggtttattcttgtctttggtcaaaacaattacaactaatttgtgatctctcttacatatgaaaggttattgagcat |
53660009 |
T |
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| Q |
480 |
aaaccttatgatcacaaagctgatgtctttagctttgcaattgttctctg |
529 |
Q |
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| T |
53660008 |
aaaccatatgatcacaaagctgatgtctttagctttgcaattgttctctg |
53659959 |
T |
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