View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15160_high_4 (Length: 490)
Name: NF15160_high_4
Description: NF15160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15160_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Original strand, 51525553 - 51526008
Alignment:
| Q |
19 |
gtgcttttctaatttgaactgcaagtgatctaaatttgtataccataatactagttttggcttgtattaagcaaattaagtcataatccatgtctgcata |
118 |
Q |
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| T |
51525553 |
gtgcttttctaatttgaactgcaagtgatctaaatttgtataccataatactagttttggcttgtattaagcaaattaagtcataatccatgtctgcata |
51525652 |
T |
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| Q |
119 |
taattggtaccttttaaaggatcactgtgatgacatggactccatgaatcaaattaaagatctatgatatgagtaacaatcaccccataaaattcaagga |
218 |
Q |
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| T |
51525653 |
taattggtaccttttaaaggatcactgtgatgacatggactccatgaatcaaa-----gatctatgatatgagtaacaatcaccccataaaattcaagga |
51525747 |
T |
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| Q |
219 |
agtgtttaatacaatttcaacacacaacattcaagaatcatgagtctcactagggtcctattattgtaaacattaactaacataatgcatacatataact |
318 |
Q |
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| T |
51525748 |
agtgtttaatacaatttcaacacccaacattcaagaatcaagagtctcactagggtcctattattgtaaacattaactaacataatgcatacatataact |
51525847 |
T |
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| Q |
319 |
aactaataataagcaacattaaattagcatgtgctgcaattataattttcttgatcttcattagtgaaatgcaagtctcacccgattatcataccttaat |
418 |
Q |
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| T |
51525848 |
aactaataataagcaacattaaattagcatgtgctgcaattataattttcttgatcttcattagtgaaatgcaagtctcacccgattatcatatcttaat |
51525947 |
T |
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| Q |
419 |
tttcattacaatttcttctttatgtatgggcatgtgcagctgtaagtggtagagggttcat |
479 |
Q |
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| T |
51525948 |
tttcattacaatttcttctttatgtatgggcatgtgcagctgtaagtggtagagggttcat |
51526008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 325 - 479
Target Start/End: Original strand, 51531600 - 51531755
Alignment:
| Q |
325 |
taataagcaacattaaattagcatgtgctgcaattataattttcttgatcttcattag-tgaaatgcaagtctcacccgattatcataccttaattttca |
423 |
Q |
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||||||| ||||||| |||| ||||| ||||||||||||||||||| ||||||| ||| ||||||| ||||| | ||| ||| ||||||||||||| |
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| T |
51531600 |
taataagtaacattatattatcatgttctgcaattataattttcttaatcttcaatagctgaaatgtaagtcaggttcaattctcacaccttaattttca |
51531699 |
T |
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| Q |
424 |
ttacaatttcttctttatgtatgggcatgtgcagctgtaagtggtagagggttcat |
479 |
Q |
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| T |
51531700 |
ttttattttcttctttatgtatggacatgtgcagctgttaatggtagagggttcat |
51531755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 51531422 - 51531466
Alignment:
| Q |
264 |
ctcactagggtcctattattgtaaacattaactaacataatgcat |
308 |
Q |
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| T |
51531422 |
ctcagtagggccttattattgtaaacattaactgacataatgcat |
51531466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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