View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15160_low_1 (Length: 658)
Name: NF15160_low_1
Description: NF15160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15160_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 18 - 646
Target Start/End: Original strand, 41804167 - 41804795
Alignment:
| Q |
18 |
acataggtaacagacaaataattttcttcaaccaaagccaaatttaatccatttatgatccattaaaggaaatcaacagttctatatatttgagaggttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41804167 |
acataggtaacagacaaataattttcttcaaccaaagccaaatttaatccatttatgttccattaaaggaaatcaacagttctatatatttgagaggttt |
41804266 |
T |
|
| Q |
118 |
gaaaccaatttcatcccatgcaaaacaatatcaataagaaaataaaaacaaacatttataaatacaactatgggaaaagccattgtttcagttgttctag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41804267 |
gaaaccaatttcatcccatgcaaaacaatatcaataagaaaataaaaacaaacatttataaatacaactatgggaaaagccattgtttcagttgttctag |
41804366 |
T |
|
| Q |
218 |
tttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41804367 |
tttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaa |
41804466 |
T |
|
| Q |
318 |
gtttggtcattgtatagattgtatgattttgtataaaatgtgtttggttaatccttacctttggactttgcatgacaacttttgtccttctatagatccc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
41804467 |
gtttggtcattgtatagattgtatgattttgtataaaatgtgtttggttaatccttacctttggactttgcatgacaccttttgtccttctatagatcac |
41804566 |
T |
|
| Q |
418 |
acaagtaacaatatcgcatctagtggcaaagatgctcctcaagttgtaagtgatattccatgatcaatgatcatttgtgtggcaatgacttgtgttgtgt |
517 |
Q |
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| T |
41804567 |
acaagtaacaatatcgcatctagtggcaaagatgctcctcaagttgtaagtgatattccatgatcaatgatcatttgtgtggcaatgacttgtgttgtgt |
41804666 |
T |
|
| Q |
518 |
cttatattaatatatctatatgtatctaaataaaacaatgttgtgtgagtaagaggctaatatgtaacataaaaatttgtagctaaataacctttatggg |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41804667 |
gttatattaatatatctatatgtatctaaataaaacaatgttgtgtgagtaagagactaatatgtaacataaaaatttgtagctaaataacctttatggg |
41804766 |
T |
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| Q |
618 |
cagggtatgggctcttcttagatatatgt |
646 |
Q |
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| T |
41804767 |
cagggtatgggctcttcttagatatatgt |
41804795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 97 - 616
Target Start/End: Original strand, 3384964 - 3385483
Alignment:
| Q |
97 |
ttctatatatttgagaggtttgaaaccaatttcatcccatgcaaaacaatatcaataagaaaataaaaa-caaacatttataaatacaactatgggaaaa |
195 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||||||| ||| |
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| T |
3384964 |
ttctatatattggagaggtttgaaaccaatttcatgccatgcaaaacaatatcaataagaaaataaaaaacaagcatttatatataca-ctatggggaaa |
3385062 |
T |
|
| Q |
196 |
gccattgtttcagttgttctagtttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatg |
295 |
Q |
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|||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |
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| T |
3385063 |
accattgcttcacttgttctagtttcccttgtagtggcaatacttctgaatggttataatgccgaggatggaggaagaggtaatcaactgaagaaagatg |
3385162 |
T |
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| Q |
296 |
atggtatttacaaatctcaaaagtttggtcattgtatagattgtatgattttgtataaaatgtgtttggttaatccttacctttggactttgcatgacaa |
395 |
Q |
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||| |||||||||||||||||||||||| || ||| ||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
3385163 |
atgctatttacaaatctcaaaagtttgggcaatgtctagattgtacgattttgtataatatatgtttggttaatccttacctttggactttgcatgacaa |
3385262 |
T |
|
| Q |
396 |
cttttgtccttctatagatcccacaagtaacaatatcgcatctagtggcaaagatgctcctcaagttgtaagtgatattccatgatcaatgatcatttgt |
495 |
Q |
| |
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|||||| |||||| ||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
3385263 |
gttttgttcttctaatgattacagaagtaacaagatcgcatccagtggcaaagatgctcctcaagttgtaagtgatcttccatgatcaatgatcgtttgt |
3385362 |
T |
|
| Q |
496 |
gtggcaatgacttgtgttgtgtcttatattaatatatctatatgtatctaaataaaacaatgttgtgtgagtaagaggctaatatgtaacataaaaattt |
595 |
Q |
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|| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
3385363 |
gtttcaatggcttgtgttgtgtgttatattaatatatctatatgtatctaaataaaacaatgttgtgtgagtaagagagtaatatgcaacataaaaattt |
3385462 |
T |
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| Q |
596 |
gtagctaaataacctttatgg |
616 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3385463 |
gtagctaaataacctttatgg |
3385483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 3384757 - 3384821
Alignment:
| Q |
31 |
acaaataattttcttcaaccaaagccaaatttaatccatttatgatccattaaaggaaatcaaca |
95 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||| |
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| T |
3384757 |
acaaataattttcttcaaccaaagccaaatttaatccattaatgttatattaaagaaaatcaaca |
3384821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 318
Target Start/End: Original strand, 34357101 - 34357232
Alignment:
| Q |
184 |
actatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccac |
283 |
Q |
| |
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||||||| |||| |||||| |||| |||||||||||| ||| ||||| ||||| |||||||| ||| |||||||| || |||||||| ||| | || |
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| T |
34357101 |
actatggcaaaaaccattgcttcacttgttctagttttcctagttgttgcaatg---ctgaatggctatggtgctgagggtgcaggaagagataaccaac |
34357197 |
T |
|
| Q |
284 |
caaagaaagatgatggtatttacaaatctcaaaag |
318 |
Q |
| |
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||||||||||||||| |||| |||| ||||||| |
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| T |
34357198 |
ataagaaagatgatggtgtttataaatatcaaaag |
34357232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 321
Target Start/End: Original strand, 4218140 - 4218271
Alignment:
| Q |
184 |
actatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccac |
283 |
Q |
| |
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||||||| |||| |||||| |||| ||||| ||||| ||||||||| ||||| || |||||| |||| |||||||| | |||||||||||| || |
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| T |
4218140 |
actatggcaaaaaccattgcttcaattgttttagttctccttgttgttgcaatttt---gaatggctatagtgctgagggtactggaagaggtaatgaac |
4218236 |
T |
|
| Q |
284 |
caaagaaagatgatggtatttacaaatctcaaaagttt |
321 |
Q |
| |
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| || ||||||| ||||||||||||||||||||||| |
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| T |
4218237 |
ctaa---agatgatcgtatttacaaatctcaaaagttt |
4218271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 4215651 - 4215726
Alignment:
| Q |
242 |
tgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaa |
317 |
Q |
| |
|
||||||||||| |||||||| || || || | |||||| |||||||||||| |||| ||||||||||||| |||| |
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|
| T |
4215651 |
tgaatggttattgtgctgagggtgcagaaacaagtaatcaaccaaagaaagacgatgatatttacaaatctgaaaa |
4215726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 41814389 - 41814327
Alignment:
| Q |
291 |
agatgatggtatttacaaatctcaaaagtttggtcattgtatagattgtatgattttgtataa |
353 |
Q |
| |
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||||||| ||||||||||||||||||| ||| ||| |||| |||||| ||||||||||||| |
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| T |
41814389 |
agatgatcatatttacaaatctcaaaagcttgatcagggtatcgattgtttgattttgtataa |
41814327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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