View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15160_low_10 (Length: 333)
Name: NF15160_low_10
Description: NF15160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15160_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 323
Target Start/End: Original strand, 28088511 - 28088813
Alignment:
| Q |
21 |
agtgcatcttcctctttactgctgaaagcacttcgtcgtgaagctgctgaaggggtaaatgtttgcatggtacttcatcaaccaaggtaatgtcaccaga |
120 |
Q |
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| T |
28088511 |
agtgcatcttcctctttactgctgaaagcacttcgtcgtgaagctgctgaaggggtaaatgtttgcatggtacttcatcaaccaaggtaatgtcaccaga |
28088610 |
T |
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| Q |
121 |
gtaattaagcatagaataaaaatgttcttcaaacattctaacataaagttaaaatctgactttttatttcgttgtgatacagctatactttgttcagaat |
220 |
Q |
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| T |
28088611 |
gtaattaagcatagaataaaaatgttcttcaaacattctaacataaagttaaaatctgactttttattttgttgtgatacagctatactttgttcagaat |
28088710 |
T |
|
| Q |
221 |
gtttgatgatataatatttctagcaaaaggtggccttactgcatatcacggacctgtnnnnnnngtagaagaatactttgccggcattggtatctctgct |
320 |
Q |
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| T |
28088711 |
gtttgatgatataatatttctagcaaaaggtggccttactgcatatcacggacctgtaaaaaaagtagaagaatactttgccggcattggtatccctgtt |
28088810 |
T |
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| Q |
321 |
cct |
323 |
Q |
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| T |
28088811 |
cct |
28088813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 310
Target Start/End: Complemental strand, 41042009 - 41041903
Alignment:
| Q |
204 |
tatactttgttcagaatgtttgatgatataatatttctagcaaaaggtggccttactgcatatcacggacctgtnnnnnnngtagaagaatactttgccg |
303 |
Q |
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| T |
41042009 |
tataccttgtttagaatgtttgatgatatagtatttctagcaaaaggtggtcttacagcatatcatggtccagtgaaaaaagtagaagaatacttttctg |
41041910 |
T |
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| Q |
304 |
gcattgg |
310 |
Q |
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| T |
41041909 |
gcattgg |
41041903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 41042215 - 41042139
Alignment:
| Q |
35 |
tttactgctgaaagcacttcgtcgtgaagctgctgaaggggtaaatgtttgcatggtacttcatcaaccaaggtaat |
111 |
Q |
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|||||| || ||||| ||||||||||||||| |||||| ||||| | |||||||||||||| ||||||||||||| |
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| T |
41042215 |
tttacttcttaaagcgcttcgtcgtgaagctcttgaaggtgtaaacatatgcatggtacttcaccaaccaaggtaat |
41042139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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