View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15160_low_15 (Length: 250)
Name: NF15160_low_15
Description: NF15160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15160_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 46639607 - 46639786
Alignment:
| Q |
16 |
ataaacttaaattaaaagtacaaaagaaacagaaaaatcaatttatagtatagaactaaaatcaaattaaatttgaaacctttcatcaaagaaataaaaa |
115 |
Q |
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| T |
46639607 |
ataaacttaaattaaaagtacaaaagaaacagaaaaatcaatttatagtatagaactaaaatcaaattaaatttgaaacctttcatcaaagaaataaaaa |
46639706 |
T |
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| Q |
116 |
tggtaaaagacatttgaacatatgataggtagtttaatctagttgaatattcaagcaatagaattagaaattttcaatat |
195 |
Q |
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| T |
46639707 |
tggtaaaagacatttgaacatatgataggtagtttaatctagttgaatattcaagcaatataattagaaattttcaatat |
46639786 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 250
Target Start/End: Original strand, 46639812 - 46639841
Alignment:
| Q |
221 |
gtctaaccaaaatatacacattcttcattt |
250 |
Q |
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| T |
46639812 |
gtctaaccaaaatatacacattcttcattt |
46639841 |
T |
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