View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15160_low_18 (Length: 236)
Name: NF15160_low_18
Description: NF15160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15160_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 46639881 - 46640103
Alignment:
| Q |
1 |
tatggatgtccgtttaaatgtctaaccaaaccaatcactctattattattttataagagtaatgtcaatttgcagcacaacaaacactaacttccaatat |
100 |
Q |
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| T |
46639881 |
tatggatgtccgtttaaatgtctaaccaaaccaatcactctattattattttataagagtaatgtcaatttgcagcacaacaaacagaaacttccaaaat |
46639980 |
T |
|
| Q |
101 |
ttctccaacatacacaca---tttatataaattcgcattcccataacacaaaatcaaacccatccattatcagtaatggaatcctcttatagtctacaat |
197 |
Q |
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| T |
46639981 |
ttctccaacatacacacaccccttatataaattcacattcccataacacaaaatcaaacccatccattatcagtaatggaatcctcttatagtctacaat |
46640080 |
T |
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| Q |
198 |
tcttaattaccttcattgtcatt |
220 |
Q |
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||||||||||||||||||||||| |
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| T |
46640081 |
tcttaattaccttcattgtcatt |
46640103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 46642191 - 46642395
Alignment:
| Q |
13 |
tttaaatgtctaaccaaaccaatcactctattattattttataagagtaatgtcaatttgcagcacaacaaacactaacttccaatatttctccaacata |
112 |
Q |
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|||||| |||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642191 |
tttaaacgtctaaccaaaccaattac---attattattttataagagtaacgtcaatttgcagcacaacaaacactaacttccaatatttctccaacata |
46642287 |
T |
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| Q |
113 |
cacacatttatataaattcgcattcccataacacaaaatcaaacccatccattatcagtaatggaatcctcttatagtctacaattcttaattaccttca |
212 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || |||||||| |||||| |
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| T |
46642288 |
cacacatttatataaattcacattcccataacacaaaatcaaacccatccattatcggtaatggaatcctcttatagtccaaaactcttaatttccttca |
46642387 |
T |
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| Q |
213 |
ttgtcatt |
220 |
Q |
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|||||||| |
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| T |
46642388 |
ttgtcatt |
46642395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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