View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15160_low_2 (Length: 614)
Name: NF15160_low_2
Description: NF15160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15160_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 19 - 595
Target Start/End: Original strand, 7542119 - 7542695
Alignment:
| Q |
19 |
atactactagctataagcaaaaatcatggattaaatctttaaatagaaacttaagcaaaaaacaatcaaacataacaaaccataatttgtgcccatacaa |
118 |
Q |
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| T |
7542119 |
atactacgagctataagcaaaaatcatggattaaatctttaaatagaaacttaagcaaaaaacaatcaaacacaacaaaccataatttgtgcccatacaa |
7542218 |
T |
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| Q |
119 |
cacctataaacaaggacaaccttctaattaacatcaccttctcaatgttcatacattaattaaagatgatttagccttttgactataaccctcttcctta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7542219 |
cacctataaacaaggacaaccttctaattaacatcaccttctcaatgttcatacattaattaaagatgatttagccttttgactataaccctcttcctta |
7542318 |
T |
|
| Q |
219 |
attttctctcatcaaattcttcacttgtctcaatctcacactaatcaaatgaaacaacctgctgcaaaatcatcattaaggaggttatgtccaaacatag |
318 |
Q |
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| T |
7542319 |
attttctctcatcaaattcttcacttgtctcaatctcacactaatcaaatgaaacaacctgctgcaaaatcatcattaaggaggttatgtccaaacatag |
7542418 |
T |
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| Q |
319 |
acaaagaagatggattggaaactgttcttgaaatacctatacctgaagaaatgttttcaaacatgggaagtaatgtgacattaagatggcaaaatatgtt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7542419 |
acaaagaagatggattggaaactgttcttgaaatacctatacctgaagaaatgttttcaaacatgggaagtaatgtgacattaagatggcaaaatatgtt |
7542518 |
T |
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| Q |
419 |
aacatggatgaaggctcaaactgaggataaattgtcttcccctacggtttcagcacgtttaaatgaacttcgatttttgctttaccttgttggctctcct |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7542519 |
aacatggatgaaggctcaaactgaggataaattgtcttcccctacggtttcagcacgtttaaatgaacttcgatttttgctttaccttgttggctctcct |
7542618 |
T |
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| Q |
519 |
cttatccctcttcaagttcaattaggacattccgttcatcgtcctgtcagagattcctcaattgtaagaacacatac |
595 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7542619 |
cttatccctcttcaagttcaattaggacattccgttcatcgtcctgtcagagattcctcaattgtaagaacacatac |
7542695 |
T |
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