View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15160_low_6 (Length: 460)
Name: NF15160_low_6
Description: NF15160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15160_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 48596287 - 48595887
Alignment:
| Q |
19 |
gaggaggaggaggatattgagggatgaggtactggtggtgatgatgagagtactgagaatgagcccttggcctccaatctatgtacaacctgtgtctgtg |
118 |
Q |
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| T |
48596287 |
gaggaggaggaggatattgagggatgaggtactggtggtgatgatgagagtactgagaatgagcccttggcctccaatctatgtacaacctgtgtctgtg |
48596188 |
T |
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| Q |
119 |
caattcagcacgtccacggtggaatgatacaatgtcaccagcatcaagtttcttctccttaacgaaacggctccaaccttttgtcatcacataactctgg |
218 |
Q |
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| T |
48596187 |
caattcagcacgtccacggtggaatgatacaatgtcaccagcatcaagtttcttctccttaacgaaacggctccaaccttttgtcatcacataactctgg |
48596088 |
T |
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| Q |
219 |
ctactgttccaataagaatacctgaaccgccacatcttaccatttcgatcttcaaaatttaggagaagccctttctcgttggtagaagaatccaaaggga |
318 |
Q |
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| T |
48596087 |
ctactgttccaataagaatacctgaaccgccacatcttaccatttcgatcttcaaaatttaggagaagccctttctcgttggtagaagaatccaaaggga |
48595988 |
T |
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| Q |
319 |
agtacttctctgcgtgttgctttggaatcacaagtcgattcagtttccctacgtcactaggtgtcaccactttgtcaaacatatgctctttctctactac |
418 |
Q |
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| T |
48595987 |
agtacttctctgcgtgttgctttggaatcacaagtcgatttagtttccctacgtcactaggtgtcaccactttgtcaaacatatgctctttctctactac |
48595888 |
T |
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| Q |
419 |
t |
419 |
Q |
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| T |
48595887 |
t |
48595887 |
T |
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Back To:
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Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 147 - 295
Target Start/End: Original strand, 8775009 - 8775157
Alignment:
| Q |
147 |
acaatgtcaccagcatcaagtttcttctccttaacgaaacggctccaaccttttgtcatcacataactctggctactgttccaataagaatacctgaacc |
246 |
Q |
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| T |
8775009 |
acaatgtcgccagcatcaagttttttctctttaacaaaacggctccaaccttttgtcataacatagctttggctactgttccaataagagtatctaaatc |
8775108 |
T |
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| Q |
247 |
gccacatcttaccatttcgatcttcaaaatttaggagaagccctttctc |
295 |
Q |
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| T |
8775109 |
tccacaattttccatttctatcttcaaaattcagaagaagacctttctc |
8775157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 41952096 - 41952166
Alignment:
| Q |
168 |
ttcttctccttaacgaaacggctccaaccttttgtcatcacataactctggctactgttccaataagaata |
238 |
Q |
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||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||||||| |
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| T |
41952096 |
ttcttctccttaacgaaccggctccatcctttggtcaaaacataactctggctactattccaataagaata |
41952166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 22190427 - 22190360
Alignment:
| Q |
168 |
ttcttctccttaacgaaacggctccaaccttttgtcatcacataactctggctactgttccaataaga |
235 |
Q |
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||||||||||||||||| |||||||| |||||||| | || ||||| || ||||||||||||||||| |
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| T |
22190427 |
ttcttctccttaacgaaccggctccatccttttgttagaacgtaactttgactactgttccaataaga |
22190360 |
T |
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