View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15160_low_8 (Length: 421)
Name: NF15160_low_8
Description: NF15160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15160_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 58 - 393
Target Start/End: Original strand, 41339206 - 41339541
Alignment:
| Q |
58 |
ttcaattaagcataatatatttttaatgtttaaattttatgcagagatatcacaattacacatataacatatctgagagacgagggaatttgaattttaa |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41339206 |
ttcaattaagcataatatatttttaatgtttaaattttatgcagagatatcacaattacacatataacatatctgagagacgagggaatttgaattttaa |
41339305 |
T |
|
| Q |
158 |
ttcaaggggaagatcttctagacccggtcagttccacaggcagccaaacaatttgaattctaattcaagggaaaggttttccagccgtggtcgaaatcat |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41339306 |
ttcaaggggaagatcttctagacccggtcagttccacaggcagccaaacaatttgaattctaattcaagggaaaggttttccagccgtggtcgaaatcat |
41339405 |
T |
|
| Q |
258 |
tacagatggaaaaatgagcaaccaggtatctaaatggttatttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataa |
357 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41339406 |
tgcagatggaaaaatgagcaaccaggtatctaaatggttatttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataa |
41339505 |
T |
|
| Q |
358 |
atataaaactatggattataataagtgcctttgctt |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
41339506 |
atataaaactatggattataataagtgcctttgctt |
41339541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 36136465 - 36136541
Alignment:
| Q |
225 |
agggaaaggttttccagccgtggtcgaaatcattacagatggaaaaatgagcaaccaggtatctaaatggttatttc |
301 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36136465 |
agggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttc |
36136541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 36136571 - 36136653
Alignment:
| Q |
299 |
ttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatggattataataa |
381 |
Q |
| |
|
|||| ||| ||||||||| |||||||| ||| |||||||| ||| ||||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
36136571 |
ttcagttatatttgtaactaactatttttctttaacttttgatgcggatatcattataaatatataactgttgattataataa |
36136653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 22629768 - 22629905
Alignment:
| Q |
126 |
atatctgagagacgagggaatttgaattttaattcaaggggaagatcttctagacccggtcagttccacaggcagccaaacaatttgaattctaattcaa |
225 |
Q |
| |
|
||||| |||||| ||||||||| ||||| |||||| || ||| ||||| |||||||| |||| |||||| | || || |||||||| ||||||| | |
|
|
| T |
22629768 |
atatccgagagaagagggaattgaaatttcaattcagcggaaaggtcttcccgacccggttagtttcacaggaaaccgaaaaatttgaactctaatttga |
22629867 |
T |
|
| Q |
226 |
gggaaaggttttccagccgtggtcgaaatcattacaga |
263 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22629868 |
agtaaaggttttccagccttggtcgaaatcattacaga |
22629905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 22629677 - 22629724
Alignment:
| Q |
58 |
ttcaattaagcataatatatttttaatgtttaaattttatgcagagata |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22629677 |
ttcaattaagcataatatatttt-aatgtttaaattttatgcagagata |
22629724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 22629970 - 22630048
Alignment:
| Q |
299 |
ttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatggattata |
377 |
Q |
| |
|
|||| ||||||||||||| |||| |||| || || ||||||| |||||||||||||||||||| |||||| ||||||| |
|
|
| T |
22629970 |
ttcagttagatttgtaactaactttttcacttaaatttttcataaggatatcattataaatatataactattgattata |
22630048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 22630454 - 22630400
Alignment:
| Q |
53 |
gctggttcaattaagcataatatatttttaatgtttaaattttatgcagagatat |
107 |
Q |
| |
|
|||| ||||||||||| ||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
22630454 |
gctgattcaattaagcgtaatatattgtaaatgtttaaattttatgcagagatat |
22630400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University