View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15160_low_9 (Length: 383)

Name: NF15160_low_9
Description: NF15160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15160_low_9
NF15160_low_9
[»] chr1 (7 HSPs)
chr1 (139-371)||(7859316-7859548)
chr1 (1-77)||(7859611-7859687)
chr1 (196-286)||(16824066-16824156)
chr1 (196-347)||(11075859-11076011)
chr1 (143-286)||(39997409-39997553)
chr1 (229-325)||(3620876-3620973)
chr1 (236-286)||(8266827-8266877)
[»] scaffold0013 (1 HSPs)
scaffold0013 (151-325)||(54677-54853)
[»] chr8 (8 HSPs)
chr8 (143-347)||(15243492-15243698)
chr8 (216-285)||(12597107-12597176)
chr8 (196-347)||(12607949-12608103)
chr8 (196-286)||(12563354-12563443)
chr8 (233-347)||(1758615-1758730)
chr8 (187-325)||(45260716-45260855)
chr8 (233-286)||(28932224-28932277)
chr8 (206-266)||(36128199-36128259)
[»] chr2 (4 HSPs)
chr2 (218-347)||(44440435-44440565)
chr2 (200-348)||(4653693-4653842)
chr2 (200-284)||(8271088-8271172)
chr2 (240-347)||(45036059-45036167)
[»] chr7 (8 HSPs)
chr7 (143-286)||(12501742-12501886)
chr7 (196-347)||(5464522-5464674)
chr7 (199-286)||(10328933-10329020)
chr7 (233-347)||(12527314-12527429)
chr7 (197-286)||(27046116-27046205)
chr7 (197-284)||(41029394-41029481)
chr7 (200-286)||(5949535-5949621)
chr7 (196-281)||(31443627-31443712)
[»] chr4 (7 HSPs)
chr4 (206-347)||(40656118-40656260)
chr4 (216-347)||(41940531-41940661)
chr4 (233-286)||(11371670-11371722)
chr4 (236-286)||(23397582-23397632)
chr4 (236-286)||(54259445-54259495)
chr4 (218-284)||(6450535-6450601)
chr4 (250-286)||(25969814-25969850)
[»] chr3 (6 HSPs)
chr3 (206-281)||(51160944-51161019)
chr3 (196-288)||(7320138-7320229)
chr3 (197-344)||(17508730-17508878)
chr3 (219-286)||(53590004-53590071)
chr3 (216-286)||(10877693-10877763)
chr3 (196-266)||(50426066-50426136)
[»] chr5 (1 HSPs)
chr5 (250-325)||(12291806-12291882)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 139 - 371
Target Start/End: Complemental strand, 7859548 - 7859316
Alignment:
Q  139 gcataaattaagttccaagcttatatgttatgatgaaagactccaaggcaggtgggagcagttccaatgagcaaagtaccttgcatgtgtttcctcctta 238  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7859548 gcataaattaagttccaagcttatatgttaggatgaaagactccaaggcaggtgggagcagttccaacgagcaaagtaccttgcatgtgtttcctcctta 7859449  T
Q  239 gccataaagtttgcacacatattttgtttcctaagaacatgcaccaatatatgataccatttgcatttaaaacatttctaatatgaaatatgttagttgc 338  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7859448 gccataaagtttgcacacatattttgtttcttaagaacatgcaccaatatatgataccatttgcatttaaaacatttctaatatgaaatatgttagttgc 7859349  T
Q  339 ataagtgtgtcggcacgatcatgaccaacaaac 371  Q
    |||| ||| ||||||||||||||||||||||||    
T  7859348 ataaatgtatcggcacgatcatgaccaacaaac 7859316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7859687 - 7859611
Alignment:
Q  1 ttgaatatactaattgaattcatgtaaaattactttacatgcataatgattaatttcattttagtgagtgactcatc 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7859687 ttgaatatactaattgaattcatgtaaaattactttacatgcataatgattaatttcattttagtgagtgactcatc 7859611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 16824066 - 16824156
Alignment:
Q  196 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    ||||||||| |||||| || |||||||||||| | | | |||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  16824066 gcagttccattgagcagagcaccttgcatgtgatcctttcttagccataaaatttgtacacatattttgttccctaagaacatgcgccaat 16824156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 347
Target Start/End: Complemental strand, 11076011 - 11075859
Alignment:
Q  196 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgata 294  Q
    |||||||||||||||| ||||| ||||||||| ||| ||||||||||||||   | |||||||||||||||   || ||||||||||||||  | |  |     
T  11076011 gcagttccaatgagcagagtactttgcatgtgattcttccttagccataaaacctacacacatattttgttcgttaggaacatgcaccaatgttgtattt 11075912  T
Q  295 ccatttgcatttaaaacatttctaatatgaaatatgttagttgcataagtgtg 347  Q
    |||||| ||| |||| ||| | |||||||||  |||||||| |||||||||||    
T  11075911 ccattttcatgtaaagcatctttaatatgaaggatgttagtagcataagtgtg 11075859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 39997409 - 39997553
Alignment:
Q  143 aaattaagttccaagcttatatgttatgatgaaagactccaaggcaggtgg-gagcagttccaatgagcaaagtaccttgcatgtgtttcctccttagcc 241  Q
    ||||||||||||||||| || | |  |||||| ||| |||| | |||| || ||||||||||| |||||  || |||||| ||||| |   |||||||||    
T  39997409 aaattaagttccaagctgatctctcgtgatgagagattccatgtcaggcggagagcagttccagtgagccgagcaccttggatgtgatcattccttagcc 39997508  T
Q  242 ataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    ||||| ||||||||||||||||| | |||||||||||||| ||||    
T  39997509 ataaaatttgcacacatattttgctccctaagaacatgcatcaat 39997553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 325
Target Start/End: Original strand, 3620876 - 3620973
Alignment:
Q  229 ttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaatata-tgataccatttgcatttaaaacatttctaatatgaa 325  Q
    |||||||||||||||||| |||| |||||| |||||||  |||||||||||||| ||| || || || ||||| ||| ||||| || |||||||||||    
T  3620876 ttcctccttagccataaaatttgtacacatgttttgttctctaagaacatgcactaatgtagtgttatcatttccatgtaaaatatctctaatatgaa 3620973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 8266877 - 8266827
Alignment:
Q  236 ttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    ||||||||||| | ||||||  ||||||||| |||||||||||||||||||    
T  8266877 ttagccataaaatctgcacaagtattttgttccctaagaacatgcaccaat 8266827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 151 - 325
Target Start/End: Original strand, 54677 - 54853
Alignment:
Q  151 ttccaagcttatatgttatgatgaaagactccaaggcaggtgggag-cagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtt 249  Q
    |||||||||||| | |||| |||| ||| |||| | |||||||  | |||||||| |||||| || |||||||||||| ||| ||||||||||||||||     
T  54677 ttccaagcttatctcttataatgagagattccatgtcaggtggaggacagttccagtgagcagagcaccttgcatgtgattcttccttagccataaagtc 54776  T
Q  250 tgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatttctaatatgaa 325  Q
    ||||||||||||||||| ||||| |||||||| ||||  | |  |||||||| ||| |||||||| |||||||||||    
T  54777 tgcacacatattttgttccctaaaaacatgcaacaatgttgtattaccatttccatgtaaaacatctctaatatgaa 54853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 143 - 347
Target Start/End: Complemental strand, 15243698 - 15243492
Alignment:
Q  143 aaattaagttccaagcttatatgttatgatgaaagactccaaggcaggtgg-gagcagttccaatgagcaaagtaccttgcatgtgtttcctccttagcc 241  Q
    |||||||||||||||| ||| | ||| ||||| ||| |||| | || | || | ||||||||| |||||| || |||||||||||| | | |||||||||    
T  15243698 aaattaagttccaagcatatctcttaggatgagagattccatgccaagcggagggcagttccagtgagcagagcaccttgcatgtgatccttccttagcc 15243599  T
Q  242 ataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatttctaatatgaaatatgttagttgcat 340  Q
    ||||| | ||||||||| | ||||| |||||||||||||||||||  | |  |  ||||| ||| |||||||| |||||||||||  |||| ||| ||||    
T  15243598 ataaaatatgcacacatgtattgttccctaagaacatgcaccaatgttgttttttcattttcatgtaaaacatctctaatatgaaggatgtgagtagcat 15243499  T
Q  341 aagtgtg 347  Q
    |||||||    
T  15243498 aagtgtg 15243492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 12597176 - 12597107
Alignment:
Q  216 accttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaa 285  Q
    |||||| ||||| | | |||||||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  12597176 accttgaatgtgatccttccttagccataaaatctgcacacatattttgttccctaagaacatgcaccaa 12597107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 347
Target Start/End: Complemental strand, 12608103 - 12607949
Alignment:
Q  196 gcagttccaatgagcaaagtaccttg--catgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatga 292  Q
    |||||||||||||||| || |||||   |||||| | | |||||||||||||| | ||||||||||||||||| | || ||||||||||||||  | |      
T  12608103 gcagttccaatgagcagagcaccttttacatgtgatccttccttagccataaaatctgcacacatattttgttccttatgaacatgcaccaatgttgtat 12608004  T
Q  293 taccatttgcatttaaaacatttctaatatgaaatatgttagttgcataagtgtg 347  Q
    | |||||| ||| |||| ||| |||||||||||  |||| ||| |||||||||||    
T  12608003 ttccatttccatgtaaaccatctctaatatgaaggatgtcagtagcataagtgtg 12607949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 286
Target Start/End: Complemental strand, 12563443 - 12563354
Alignment:
Q  196 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    ||||||| | |||||| || |||||||||||| | | |||||| ||||||| | |||||||||||||| |||||||| |||||||||||||    
T  12563443 gcagttcgagtgagcatagcaccttgcatgtgatccttccttaaccataaaatctgcacacatatttt-tttcctaaaaacatgcaccaat 12563354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 347
Target Start/End: Original strand, 1758615 - 1758730
Alignment:
Q  233 tccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatttctaatatgaaatatgt 331  Q
    |||||||||||||| | |||||| |||||||||  |||||||||||||| ||||  | |  | |||||| ||| |||| ||| |||||||||||  ||||    
T  1758615 tccttagccataaaatctgcacatatattttgtcccctaagaacatgcatcaatgttgtatttccattttcatgtaaatcatctctaatatgaaggatgt 1758714  T
Q  332 tagttgcataagtgtg 347  Q
    |||| |||||||||||    
T  1758715 tagtggcataagtgtg 1758730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 325
Target Start/End: Original strand, 45260716 - 45260855
Alignment:
Q  187 caggtgggagcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    |||||||| |||||| ||||||||| || || |||||  || |||||||||| | ||||| | ||||| ||||||||| | | |||||||||||| ||||    
T  45260716 caggtgggggcagtttcaatgagcatagcacattgcacatgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaat 45260815  T
Q  287 ata-tgataccatttgcatttaaaacatttctaatatgaa 325  Q
    ||| || |  ||||| | | |||||||| |||||||||||    
T  45260816 atagtgttgtcatttccgtgtaaaacatctctaatatgaa 45260855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 28932224 - 28932277
Alignment:
Q  233 tccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    |||||||||||||| | | |||||||||||||||  ||||||||||||||||||    
T  28932224 tccttagccataaaatctacacacatattttgttctctaagaacatgcaccaat 28932277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 36128259 - 36128199
Alignment:
Q  206 tgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtt 266  Q
    |||||| || |||||||||||| |   |||||||||||||| |||||||||||||||||||    
T  36128259 tgagcagagcaccttgcatgtgatctttccttagccataaaatttgcacacatattttgtt 36128199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 347
Target Start/End: Complemental strand, 44440565 - 44440435
Alignment:
Q  218 cttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatttc 316  Q
    |||||||||| | | |||||| ||||||| | ||||||||||||||||| |||||||||||||||||||  | |  |  ||||| ||| |||||||| ||    
T  44440565 cttgcatgtgatccttccttaaccataaaatctgcacacatattttgttccctaagaacatgcaccaatgttgtattttcattttcatgtaaaacatctc 44440466  T
Q  317 taatatgaaatatgttagttgcataagtgtg 347  Q
    |||||||||  |||||||| |||||||||||    
T  44440465 taatatgaaggatgttagtagcataagtgtg 44440435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 348
Target Start/End: Complemental strand, 4653842 - 4653693
Alignment:
Q  200 ttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaatata-tgataccat 298  Q
    ||||| |||||| || |||||| ||||| | | |||||||||||||| |||||||||||||||||||   | |||||||| ||||||||| |  | ||||    
T  4653842 ttccagtgagcagagcaccttgtatgtgatccttccttagccataaaatttgcacacatattttgttctatgagaacatgtaccaatatagtatttccat 4653743  T
Q  299 ttgcatttaaaacatttctaatatgaaatatgttagttgcataagtgtgt 348  Q
    || ||| || | ||| | |||||||||| |||||||| ||||||||||||    
T  4653742 ttccatgtagagcatctttaatatgaaagatgttagtagcataagtgtgt 4653693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 8271088 - 8271172
Alignment:
Q  200 ttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcacca 284  Q
    ||||| |||||| || | |||||||||| ||| |||||||||||||| | |||| |||||||||||| |||||||||||| ||||    
T  8271088 ttccagtgagcatagcatcttgcatgtgattcttccttagccataaaatctgcatacatattttgttccctaagaacatgaacca 8271172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 347
Target Start/End: Original strand, 45036059 - 45036167
Alignment:
Q  240 ccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatttctaatatgaaatatgttagttgc 338  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||| |||  | |  |  ||||| ||| |||||||| |||||||||||  |||| ||| ||    
T  45036059 ccataaaatttgcacacatgttttgttccctaagaacatgcactaatgttgtattttcattttcatgtaaaacatctctaatatgaaggatgtcagtagc 45036158  T
Q  339 ataagtgtg 347  Q
    |||||||||    
T  45036159 ataagtgtg 45036167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 286
Target Start/End: Complemental strand, 12501886 - 12501742
Alignment:
Q  143 aaattaagttccaagcttatatgttatgatgaaagactccaaggcaggtgggag-cagttccaatgagcaaagtaccttgcatgtgtttcctccttagcc 241  Q
    ||||||||||| |||||||| | | | ||||||||| |||| | |||| ||| | |||||||| |||||| || ||||||||||   | | |||||||||    
T  12501886 aaattaagttcgaagcttatctctcaagatgaaagattccatgccaggaggggggcagttccagtgagcagagcaccttgcatgcaatccgtccttagcc 12501787  T
Q  242 ataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    ||||| | ||||||||| ||||||  |||||||||||||||||||    
T  12501786 ataaaatctgcacacatgttttgtaacctaagaacatgcaccaat 12501742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 347
Target Start/End: Original strand, 5464522 - 5464674
Alignment:
Q  196 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgata 294  Q
    |||||| || ||| ||||| |||||||||||| | | |||||||||||||| | ||||||  ||||||||| || ||||| ||||||||||  | |  |     
T  5464522 gcagtttcagtgaccaaagcaccttgcatgtgatccttccttagccataaaatctgcacatgtattttgttccccaagaatatgcaccaatgttctattt 5464621  T
Q  295 ccatttgcatttaaaacatttctaatatgaaatatgttagttgcataagtgtg 347  Q
    |||||| ||| |||||||| |||||||||||  ||| |||| |||||||||||    
T  5464622 ccatttccatgtaaaacatctctaatatgaaggatgctagtagcataagtgtg 5464674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 10328933 - 10329020
Alignment:
Q  199 gttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    |||||| |||||| || || ||||||||| | | |||||  | ||||| ||||||||||||||||||| |||||||||||||||||||    
T  10328933 gttccagtgagcagagcactttgcatgtgatccttccttcactataaaatttgcacacatattttgttccctaagaacatgcaccaat 10329020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 347
Target Start/End: Complemental strand, 12527429 - 12527314
Alignment:
Q  233 tccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatttctaatatgaaatatgt 331  Q
    |||||||||||||| | ||||||||| ||||||  |||||||||||||||||||  | |  | |||||| ||| |||||| | |||||||||||  ||||    
T  12527429 tccttagccataaaatctgcacacatgttttgtaacctaagaacatgcaccaatgttgtatttccattttcatgtaaaacgtctctaatatgaaggatgt 12527330  T
Q  332 tagttgcataagtgtg 347  Q
    |||| |||||||||||    
T  12527329 tagtagcataagtgtg 12527314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 27046116 - 27046205
Alignment:
Q  197 cagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    |||||||| |||||| || |||||||||||| | | ||||||| || ||| ||||| ||| ||||||||| | |||||||||||||||||    
T  27046116 cagttccagtgagcagagcaccttgcatgtgatccttccttagtcacaaaatttgcccacgtattttgttccataagaacatgcaccaat 27046205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 41029481 - 41029394
Alignment:
Q  197 cagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcacca 284  Q
    ||||||||||||||| || |||||| |||||   | |||||||||||||| | | |||||||||||||||  | ||||||||||||||    
T  41029481 cagttccaatgagcagagcaccttgtatgtgacccttccttagccataaaatctacacacatattttgttcgcgaagaacatgcacca 41029394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 286
Target Start/End: Original strand, 5949535 - 5949621
Alignment:
Q  200 ttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    ||||| |||| | ||||||||||||||| | | | ||||||| |||| |   ||||||| ||||||| |||||||||||||||||||    
T  5949535 ttccagtgagtagagtaccttgcatgtgatcctttcttagccgtaaaatcaacacacatgttttgttccctaagaacatgcaccaat 5949621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 281
Target Start/End: Complemental strand, 31443712 - 31443627
Alignment:
Q  196 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgca 281  Q
    |||||||||  ||||| | ||||||||||||  |   |||||||||||||| | | |||||||||||| || ||||||||||||||    
T  31443712 gcagttccagagagcagaataccttgcatgtaatcattccttagccataaaatctacacacatattttattccctaagaacatgca 31443627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 347
Target Start/End: Original strand, 40656118 - 40656260
Alignment:
Q  206 tgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaatat-atgataccatttgcat 304  Q
    |||||| || |||| |||| || ||| ||||||| |||||| | |||||||||||||||||  || ||||||||||||||| |  |  | |||||| |||    
T  40656118 tgagcatagcacctcgcatatgattcttccttagtcataaaatctgcacacatattttgttctcttagaacatgcaccaatgtcgtatttccatttccat 40656217  T
Q  305 ttaaaacatttctaatatgaaatatgttagttgcataagtgtg 347  Q
     |||||||| ||| ||||||||||||||||| | |||||||||    
T  40656218 gtaaaacatctctgatatgaaatatgttagtagtataagtgtg 40656260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 347
Target Start/End: Original strand, 41940531 - 41940661
Alignment:
Q  216 accttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatt 314  Q
    |||||||||||| | | |||||||||||||| ||||||||  ||||||||| |||||||||||||| ||||  | |  |||||||| ||| ||||||||     
T  41940531 accttgcatgtgatccttccttagccataaaatttgcaca--tattttgttccctaagaacatgcatcaatgttgtattaccatttccatgtaaaacatc 41940628  T
Q  315 tctaatatgaaatatgttagttgcataagtgtg 347  Q
    |||||||||||  ||||  || |||||||||||    
T  41940629 tctaatatgaaggatgtcggtagcataagtgtg 41940661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 11371722 - 11371670
Alignment:
Q  233 tccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  11371722 tccttagccataaaatctgcacacatattttg-ttcctaagaacatgcaccaat 11371670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 23397582 - 23397632
Alignment:
Q  236 ttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    ||||||||||| |||||||| || ||||||| |||||||||||||||||||    
T  23397582 ttagccataaaatttgcacatatgttttgttccctaagaacatgcaccaat 23397632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 54259495 - 54259445
Alignment:
Q  236 ttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    |||||||| || ||||||||||||||||||| ||||||||||||| |||||    
T  54259495 ttagccatgaaatttgcacacatattttgttccctaagaacatgctccaat 54259445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 6450601 - 6450535
Alignment:
Q  218 cttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcacca 284  Q
    |||||||||| ||  |||||| ||||||| | | ||||||||||||||| |||||||||||| ||||    
T  6450601 cttgcatgtgatttatccttaaccataaaatctacacacatattttgttccctaagaacatgaacca 6450535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 25969850 - 25969814
Alignment:
Q  250 tgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    ||||||||||||||||| | |||||||||||||||||    
T  25969850 tgcacacatattttgttccttaagaacatgcaccaat 25969814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 51161019 - 51160944
Alignment:
Q  206 tgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgca 281  Q
    |||||| || |||||| || || | |||||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  51161019 tgagcagagcaccttgaatatgatccctccttagccataaaatttgcacacatgttttgttttctaagaacatgca 51160944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 7320138 - 7320229
Alignment:
Q  196 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaatat 288  Q
    |||||| ||||||||| |  |||||||||| | | | | |||||||||||| | ||||||||||||||| ||||||||| |||||||||||||    
T  7320138 gcagtttcaatgagcagatcaccttgcatgagatcctttcttagccataaaatctgcacacatattttg-ttcctaagagcatgcaccaatat 7320229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 344
Target Start/End: Complemental strand, 17508878 - 17508730
Alignment:
Q  197 cagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgatac 295  Q
    |||||||| | |||| || |||||||||||| | | |||| | | ||||| | |||| |||||||||||| |||||||||||||||||||  | |  |||    
T  17508878 cagttccagtaagcagagcaccttgcatgtgatccttcctaaactataaaatatgcaaacatattttgttccctaagaacatgcaccaatgttgtattac 17508779  T
Q  296 catttgcatttaaaacatttctaatatgaaatatgttagttgcataagt 344  Q
    | ||| ||| |||||||| |||||||||||  |||| ||| ||||||||    
T  17508778 cgttttcatgtaaaacatctctaatatgaaggatgtcagtagcataagt 17508730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 53590004 - 53590071
Alignment:
Q  219 ttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    ||||||||| |  ||||||||||||||| | ||||||||||||||||| ||| | |||||||||||||    
T  53590004 ttgcatgtgatctctccttagccataaaatctgcacacatattttgttcccttaaaacatgcaccaat 53590071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 10877763 - 10877693
Alignment:
Q  216 accttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 286  Q
    |||||||||||| | | |||||||||||||| | ||||||||| || |||| |||||| ||||||| ||||    
T  10877763 accttgcatgtgatacttccttagccataaaatctgcacacatgttatgttccctaagtacatgcatcaat 10877693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 50426136 - 50426066
Alignment:
Q  196 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtt 266  Q
    ||||||||| ||||||||| || ||||||||| | | ||||| |||||||| | |||| ||||||||||||    
T  50426136 gcagttccagtgagcaaagcacattgcatgtgatccttccttggccataaaatatgcatacatattttgtt 50426066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 325
Target Start/End: Original strand, 12291806 - 12291882
Alignment:
Q  250 tgcacacatattttgtttcctaagaacatgcaccaatatatga-taccatttgcatttaaaacatttctaatatgaa 325  Q
    |||||||||||||||||  |||||||||| ||||||| ||  | | |||||| ||| |||||||| |||||||||||    
T  12291806 tgcacacatattttgttctctaagaacatacaccaatgtagcattgccattttcatgtaaaacatctctaatatgaa 12291882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University