View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15161_high_1 (Length: 714)

Name: NF15161_high_1
Description: NF15161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15161_high_1
NF15161_high_1
[»] chr5 (11 HSPs)
chr5 (1-477)||(7221207-7221692)
chr5 (560-671)||(32309477-32309588)
chr5 (561-655)||(10299898-10299992)
chr5 (482-593)||(41034428-41034535)
chr5 (538-671)||(1649547-1649678)
chr5 (561-673)||(42224664-42224776)
chr5 (492-595)||(25002014-25002113)
chr5 (563-672)||(20526750-20526859)
chr5 (492-538)||(30325883-30325929)
chr5 (496-590)||(7585064-7585154)
chr5 (475-536)||(30892235-30892296)
[»] chr7 (8 HSPs)
chr7 (490-619)||(46994369-46994494)
chr7 (478-538)||(6579997-6580057)
chr7 (492-668)||(37489902-37490074)
chr7 (477-538)||(27888407-27888468)
chr7 (478-534)||(27949402-27949458)
chr7 (476-536)||(41873429-41873489)
chr7 (537-595)||(24845479-24845537)
chr7 (478-536)||(36738585-36738643)
[»] chr2 (13 HSPs)
chr2 (482-668)||(19193501-19193683)
chr2 (537-658)||(37077970-37078091)
chr2 (475-657)||(31494219-31494395)
chr2 (475-619)||(19953444-19953584)
chr2 (476-674)||(43400127-43400321)
chr2 (560-671)||(42669802-42669913)
chr2 (478-538)||(12989316-12989376)
chr2 (484-637)||(30706300-30706449)
chr2 (476-536)||(37228627-37228687)
chr2 (490-528)||(8009522-8009560)
chr2 (560-594)||(42763773-42763807)
chr2 (494-536)||(43400146-43400188)
chr2 (490-535)||(15508923-15508968)
[»] chr3 (19 HSPs)
chr3 (484-657)||(27243056-27243225)
chr3 (491-671)||(7640602-7640778)
chr3 (540-674)||(49720054-49720188)
chr3 (565-657)||(50661599-50661691)
chr3 (482-538)||(52123955-52124011)
chr3 (475-538)||(41451887-41451950)
chr3 (477-536)||(43657879-43657938)
chr3 (476-639)||(44225827-44225986)
chr3 (560-657)||(8475165-8475262)
chr3 (477-538)||(24734830-24734891)
chr3 (585-672)||(37776800-37776887)
chr3 (484-538)||(20791421-20791475)
chr3 (561-619)||(43657069-43657127)
chr3 (478-536)||(54186924-54186982)
chr3 (474-536)||(54187055-54187117)
chr3 (484-537)||(14236145-14236198)
chr3 (483-536)||(27243047-27243100)
chr3 (587-672)||(28529249-28529334)
chr3 (475-536)||(46575942-46576003)
[»] chr1 (12 HSPs)
chr1 (470-658)||(28274796-28274980)
chr1 (490-672)||(18157034-18157210)
chr1 (537-676)||(21977179-21977318)
chr1 (484-637)||(50424866-50425015)
chr1 (537-672)||(5602609-5602743)
chr1 (476-538)||(39974193-39974255)
chr1 (484-536)||(30787396-30787448)
chr1 (561-672)||(11430437-11430548)
chr1 (482-536)||(13388335-13388389)
chr1 (537-595)||(21970327-21970385)
chr1 (589-671)||(26980363-26980445)
chr1 (566-667)||(14340999-14341100)
[»] scaffold0005 (1 HSPs)
scaffold0005 (484-667)||(296837-297016)
[»] chr6 (11 HSPs)
chr6 (537-672)||(12690248-12690383)
chr6 (536-671)||(29610285-29610420)
chr6 (562-658)||(25326841-25326937)
chr6 (562-658)||(26159376-26159472)
chr6 (491-534)||(3984250-3984293)
chr6 (476-526)||(10060854-10060904)
chr6 (560-621)||(26170963-26171024)
chr6 (482-671)||(19090213-19090398)
chr6 (476-536)||(32122790-32122850)
chr6 (476-538)||(1392752-1392814)
chr6 (584-670)||(6109869-6109955)
[»] chr4 (7 HSPs)
chr4 (484-667)||(27654478-27654657)
chr4 (537-667)||(24106696-24106826)
chr4 (484-623)||(51904616-51904751)
chr4 (477-671)||(42862414-42862604)
chr4 (482-538)||(8109081-8109137)
chr4 (484-671)||(5994868-5995051)
chr4 (479-536)||(16318926-16318981)
[»] chr8 (12 HSPs)
chr8 (537-671)||(45218566-45218698)
chr8 (537-652)||(9953718-9953833)
chr8 (155-231)||(33351079-33351155)
chr8 (537-623)||(28485430-28485516)
chr8 (560-672)||(45524948-45525060)
chr8 (560-655)||(27799278-27799373)
chr8 (477-538)||(16983519-16983580)
chr8 (537-655)||(13105370-13105487)
chr8 (6-69)||(33351260-33351323)
chr8 (492-595)||(24683644-24683743)
chr8 (485-538)||(5980004-5980057)
chr8 (481-534)||(35151727-35151780)


Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 7221207 - 7221692
Alignment:
Q  1 tcatgtagggtttaaatcctttcgtgttcatctttgcactgattgccaatgctacttatgtgggaaggtatataattgatactcaccttatcat--acat 98  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||| || |||||||| |||||||  ||||    
T  7221207 tcatgtagggtttaaatcctttcatgttcatctttgcactgattgctaatgccacttatgtgggaaggtacatagtttatactcactttatcatgcacat 7221306  T
Q  99 at-------attaatctgagaagactatactt-aaaatataaatctaactcattgaattgtttgtgcagtattcttgtaagaactacagaatgggaaagc 190  Q
    ||       ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7221307 atctttcttattaatctgagaagactatacttcaaaaaataaatctaactcattgaattgtttgtgcagtattcttgtaagaactacagaatgggaaagc 7221406  T
Q  191 atcaaagctaatatgccatggttgttggatgccatagtttgtgttgcattggacctatttataatattgcagtacatcaattacagataccatcgaaaga 290  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7221407 atcaaagctaatatgccatggttgctggatgccatagtttgtgttgcattggacttatttataatattgcagtacatcaattacagataccatcgaaaga 7221506  T
Q  291 caacaacatcaagtgactatggtaattatcaagactacaaagaagccagaaaaactattgtttcttgattttgtggagttgtaacattaattttgatttg 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||     
T  7221507 caacaacatcaagtgactatggtaattatcaagactacaaagaagccagaaaaactattgtttcttga-tttgtggagttgtaacattattttttatttt 7221605  T
Q  391 aacaaatattatattattctactaacattcagctattagtgtttgagtcttggtgtagtattatgtggactacatgataactagcaa 477  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7221606 aacaaatattatattattctactaacattcagctattagtggttgagtcttggtgtagtattatgtggactacatgataactagcaa 7221692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 560 - 671
Target Start/End: Complemental strand, 32309588 - 32309477
Alignment:
Q  560 cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtca 659  Q
    ||||||||| |||||||| |||||| ||||||| || ||| |||  |||| ||| |||||||||| ||| | |||||| ||||||||||||||||||||     
T  32309588 cacactttgaaaatgggtttcacttgaagtggtcggacatacattaattttatccaataagagagtgagtgctagagagaatgttgaaaagagagtgtct 32309489  T
Q  660 ttagcattcctc 671  Q
     |||||||||||    
T  32309488 ctagcattcctc 32309477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 561 - 655
Target Start/End: Complemental strand, 10299992 - 10299898
Alignment:
Q  561 acactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagt 655  Q
    |||||||||||||||||| |||| ||||||||||| ||||||| |  |||||| |||||||||  ||| |||  ||| | |||||||||||||||    
T  10299992 acactttggaaatgggtcccactaaaagtggtgggtcatgcattgggttcatccaataagagaatgagtgttgaagagagtgttgaaaagagagt 10299898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 482 - 593
Target Start/End: Original strand, 41034428 - 41034535
Alignment:
Q  482 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctca 581  Q
    |||||||| ||||||||||||| |||||||| || |||| ||||||||| |    |||| |||||||| | || ||| ||||||||||||||||||  ||    
T  41034428 aatgctacaaacactctcttttcaacactctatccaacactcactttctaa----ttggcttaaatcatggtgggtctcacactttggaaatgggttcca 41034523  T
Q  582 cttaaagtggtg 593  Q
    |||||| |||||    
T  41034524 cttaaaatggtg 41034535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 671
Target Start/End: Complemental strand, 1649678 - 1649547
Alignment:
Q  538 tggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagaga 637  Q
    |||||||||| ||| || ||| ||||||||  |||||| || ||||||||||||| | |||| |||  |||||||| ||||||| || ||| ||||||||    
T  1649678 tggtttaaattaaggtg-gtctcacactttaaaaatggttc-cacttaaagtggtagagcatacattaatttcatccaataagatagtgagtgttagaga 1649581  T
Q  638 aaatgttgaaaagagagtgtcattagcattcctc 671  Q
     | ||||||||||||||||||  || ||||||||    
T  1649580 gagtgttgaaaagagagtgtccctaacattcctc 1649547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 561 - 673
Target Start/End: Original strand, 42224664 - 42224776
Alignment:
Q  561 acactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcat 660  Q
    |||||||||||||||  | ||| |||||||||||| ||| ||| ||||||| ||||||| |||| ||| | |||||| | || | ||||||||||||       
T  42224664 acactttggaaatggaacccacataaagtggtgggacatacattgatttcacctaataaaagagtgagtgctagagagagtgctcaaaagagagtgttgc 42224763  T
Q  661 tagcattcctcaa 673  Q
    |||||||||||||    
T  42224764 tagcattcctcaa 42224776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 492 - 595
Target Start/End: Original strand, 25002014 - 25002113
Alignment:
Q  492 acactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtgg 591  Q
    |||||||||||| |||||||| || |||| ||||||||| |||||    |||||||||   || ||| |||||||||||||||||   ||||||||||||    
T  25002014 acactctcttttcaacactctctccaacactcactttctaattgg----tttaaatcatagtgggtctcacactttggaaatgggctccacttaaagtgg 25002109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 672
Target Start/End: Complemental strand, 20526859 - 20526750
Alignment:
Q  563 actttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcatta 662  Q
    |||||| |||||||| ||||  |||||| |||| |||| || ||||||||| || ||||||   || |||| ||||| ||||||||||||||||||  ||    
T  20526859 actttgaaaatgggtttcacgaaaagtgatgggtcatgtattgatttcatcaaacaagagaataagtgttaaagaaagtgttgaaaagagagtgtctcta 20526760  T
Q  663 gcattcctca 672  Q
     |||||||||    
T  20526759 acattcctca 20526750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 538
Target Start/End: Original strand, 30325883 - 30325929
Alignment:
Q  492 acactctctttttaacactctttctaacaatcactttcttattggtt 538  Q
    |||||||||||| |||||||| ||||| | |||||||||||||||||    
T  30325883 acactctcttttgaacactctctctaatactcactttcttattggtt 30325929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 590
Target Start/End: Complemental strand, 7585154 - 7585064
Alignment:
Q  496 tctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtg 590  Q
    |||||||| ||||||||| | |||| ||||||| ||||| |||    ||||| ||| || ||| ||||| |||||||||||| ||||||||||||    
T  7585154 tctcttttcaacactcttccaaacactcactttattatttgtt----taaattaaggtgagtctcacacattggaaatgggtttcacttaaagtg 7585064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 536
Target Start/End: Complemental strand, 30892296 - 30892235
Alignment:
Q  475 caagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 536  Q
    ||||||||||||||  |||||||||||| || |||||| ||||||| ||||| || ||||||    
T  30892296 caagagaaatgctaggaacactctctttctagcactctctctaacactcactctcctattgg 30892235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 490 - 619
Target Start/End: Original strand, 46994369 - 46994494
Alignment:
Q  490 caacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagt 589  Q
    |||||||||||||||||| |||| ||||||| ||||||| ||||||| |    ||||||| | || ||| |||||||||||||||| | |||||||||||    
T  46994369 caacactctctttttaacgctctctctaacactcacttttttattggct----taaatcatggtgggtctcacactttggaaatggatatcacttaaagt 46994464  T
Q  590 ggtggggcatgcatagatttcatctaataa 619  Q
    |||||| ||| ||| |||||||||||||||    
T  46994465 ggtgggtcatacattgatttcatctaataa 46994494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 6579997 - 6580057
Alignment:
Q  478 gagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 538  Q
    |||| ||||||||||||||||||||| |||||||| ||||| | ||||| |||||||||||    
T  6579997 gagatatgctaccaacactctcttttgaacactctctctaatactcactctcttattggtt 6580057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 492 - 668
Target Start/End: Complemental strand, 37490074 - 37489902
Alignment:
Q  492 acactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtgg 591  Q
    |||||||||||| |||||||| || |||| |||||| ||||||||||    ||||| ||| |  ||| ||||||||||| ||| ||  |||||||  |||    
T  37490074 acactctcttttcaacactctctcaaacactcacttacttattggtt----taaatgaaggtcggtctcacactttggagatgagttccacttaatatgg 37489979  T
Q  592 tggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattc 668  Q
    |||| ||| |||  |||| | | |||||   || ||| ||| |||| |||||||||||||||||||| |||||||||    
T  37489978 tgggacatacattcatttaaaccaataaacaagtgagtgtttgagagaatgttgaaaagagagtgtccttagcattc 37489902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 27888468 - 27888407
Alignment:
Q  477 agagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 538  Q
    |||| ||||||| |||||||||||||| | |||||| ||||||| ||||| |||||||||||    
T  27888468 agaggaatgctagcaacactctcttttgagcactctctctaacactcactctcttattggtt 27888407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 534
Target Start/End: Complemental strand, 27949458 - 27949402
Alignment:
Q  478 gagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttatt 534  Q
    ||||||||||| |||||||||||||| |||||||| ||||| | ||||| |||||||    
T  27949458 gagaaatgctagcaacactctcttttgaacactctctctaatactcactctcttatt 27949402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 536
Target Start/End: Original strand, 41873429 - 41873489
Alignment:
Q  476 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 536  Q
    |||||||||||||  |||||||||||| || |||||| ||||||| ||||||| |||||||    
T  41873429 aagagaaatgctaggaacactctctttctagcactctctctaacactcacttttttattgg 41873489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 595
Target Start/End: Original strand, 24845479 - 24845537
Alignment:
Q  537 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggg 595  Q
    |||| |||||||| | || ||| ||||||||||||||||||  ||||||||||||||||    
T  24845479 ttggcttaaatcatggtgagtctcacactttggaaatgggttccacttaaagtggtggg 24845537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 478 - 536
Target Start/End: Complemental strand, 36738643 - 36738585
Alignment:
Q  478 gagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 536  Q
    |||||||| ||  ||||||||||||||| |||||||||||||| ||||| || ||||||    
T  36738643 gagaaatgttaagaacactctctttttagcactctttctaacactcactctcctattgg 36738585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 482 - 668
Target Start/End: Original strand, 19193501 - 19193683
Alignment:
Q  482 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctca 581  Q
    ||||||| |||||||||||||| |||||||| || |||| ||||||||| |    || |||||||||| | || ||| || ||||||||||| ||| |||    
T  19193501 aatgctagcaacactctcttttcaacactctctccaacactcactttctaa----ttagtttaaatcatggtgggtctcatactttggaaataggtttca 19193596  T
Q  582 cttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattc 668  Q
    |||||||||||||| ||| ||| | ||| ||| |||||||||  ||| |||  ||| | ||||||||||||||||||  ||||||||    
T  19193597 cttaaagtggtgggtcatacattggttttatccaataagagaatgagtgttcaagagagtgttgaaaagagagtgtctctagcattc 19193683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 537 - 658
Target Start/End: Complemental strand, 37078091 - 37077970
Alignment:
Q  537 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagag 636  Q
    ||||||||||| ||| || ||| ||||| |||||||||| |  |||||||||||||||| ||| ||   ||| |||| |||||||||| | | |||||||    
T  37078091 ttggtttaaattaaggtgggtctcacacattggaaatggattccacttaaagtggtgggacatacactaattacatccaataagagagtgtgtgttagag 37077992  T
Q  637 aaaatgttgaaaagagagtgtc 658  Q
    ||| ||||||||||||||||||    
T  37077991 aaagtgttgaaaagagagtgtc 37077970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 475 - 657
Target Start/End: Complemental strand, 31494395 - 31494219
Alignment:
Q  475 caagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatg 574  Q
    |||||| | ||||| |||||||||||||| ||||||||    |||| ||||||  ||||||| |    ||||||||| || ||| ||||| |||||||||    
T  31494395 caagagtagtgctagcaacactctcttttcaacactctcctaaacactcacttcattattggct----taaatcaaggtgggtctcacacattggaaatg 31494300  T
Q  575 ggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 657  Q
    |||  |||||||||| ||||| ||| |||   ||||||| |||||||||| ||| |||||||  | |||||||||||||||||    
T  31494299 ggttccacttaaagtagtgggacatacattattttcatccaataagagagtgagtgttagag--agtgttgaaaagagagtgt 31494219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 475 - 619
Target Start/End: Complemental strand, 19953584 - 19953444
Alignment:
Q  475 caagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatg 574  Q
    |||||| ||||||| ||||||||||||||||||| | | || || | ||||||| ||||||| |    |||||||   || ||| |||||||||||||||    
T  19953584 caagagtaatgctagcaacactctctttttaacattttctccaatactcacttttttattggat----taaatcatagtgagtctcacactttggaaatg 19953489  T
Q  575 ggtctcacttaaagtggtggggcatgcatagatttcatctaataa 619  Q
    |||  |||||||||||||||| ||| ||| | ||||||| |||||    
T  19953488 ggttccacttaaagtggtgggtcatacattggtttcatccaataa 19953444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 476 - 674
Target Start/End: Complemental strand, 43400321 - 43400127
Alignment:
Q  476 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgg 575  Q
    ||||| ||||||| |||||||||||||| ||||||||    |||| ||| ||| |||||||||    ||||||||| || ||  ||||| |||  ||| |    
T  43400321 aagagtaatgctagcaacactctcttttcaacactctcctaaacactcattttattattggtt----taaatcaaggtgggtttcacacattgataatag 43400226  T
Q  576 gtctcacttaaagtggtggggcatgca-tagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattcctcaaa 674  Q
    ||  |||||||||||||||| ||| || ||| ||||||| ||||||| || ||| |||||||| | ||||||||||||||| ||  ||||||| ||||||    
T  43400225 gttccacttaaagtggtgggacatacactag-tttcatccaataagaaagtgagtgttagagagagtgttgaaaagagagtatccatagcattactcaaa 43400127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 560 - 671
Target Start/End: Original strand, 42669802 - 42669913
Alignment:
Q  560 cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtca 659  Q
    |||||||||||||||||| ||||||||||||||||| ||| ||| ||||  ||| ||||||| |  ||| |||  ||| | |||||||||||||| |||     
T  42669802 cacactttggaaatgggtttcacttaaagtggtgggtcatacattgattctatccaataagaaaatgagtgttgaagagagtgttgaaaagagagcgtcc 42669901  T
Q  660 ttagcattcctc 671  Q
     || ||||||||    
T  42669902 ctaacattcctc 42669913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 12989376 - 12989316
Alignment:
Q  478 gagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 538  Q
    ||||| ||||| |||||||||||||| |||||||| ||||| | ||||| |||||||||||    
T  12989376 gagaagtgctagcaacactctcttttgaacactctctctaatactcactctcttattggtt 12989316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 637
Target Start/End: Complemental strand, 30706449 - 30706300
Alignment:
Q  484 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 583  Q
    ||||| |||||||||||||| |||||||| || |||| ||||||| ||    |||||||||||| ||| || ||| || || ||| ||||| ||  || |    
T  30706449 tgctagcaacactctcttttcaacactctctcaaacactcactttatt----gttggtttaaattaaggtgggtctcatacattgaaaatgagttccatt 30706354  T
Q  584 taaagtggtggggcatgcatagatttcatctaataagagagcgagggttagaga 637  Q
    |||| ||||| | ||| |||  |||||||| |||||||||| ||| ||||||||    
T  30706353 taaactggtgagacatacattaatttcatcaaataagagagtgagtgttagaga 30706300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 536
Target Start/End: Complemental strand, 37228687 - 37228627
Alignment:
Q  476 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 536  Q
    ||||| || ||||||||||||||||||| | ||||||||||| || ||||||| |||||||    
T  37228687 aagaggaaggctaccaacactctcttttgagcactctttctagcactcacttttttattgg 37228627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 528
Target Start/End: Original strand, 8009522 - 8009560
Alignment:
Q  490 caacactctctttttaacactctttctaacaatcacttt 528  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  8009522 caacactctcttttgaacactctttctaacactcacttt 8009560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 594
Target Start/End: Complemental strand, 42763807 - 42763773
Alignment:
Q  560 cacactttggaaatgggtctcacttaaagtggtgg 594  Q
    ||||||||||||||||||||||| |||||||||||    
T  42763807 cacactttggaaatgggtctcacataaagtggtgg 42763773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 536
Target Start/End: Original strand, 43400146 - 43400188
Alignment:
Q  494 actctctttttaacactctttctaacaatcactttcttattgg 536  Q
    |||||||||| |||||||| ||||||| |||||||||||||||    
T  43400146 actctcttttcaacactctctctaacactcactttcttattgg 43400188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 535
Target Start/End: Original strand, 15508923 - 15508968
Alignment:
Q  490 caacactctctttttaacactctttctaacaatcactttcttattg 535  Q
    |||||||||||||| |||||||||||||||| ||||| | ||||||    
T  15508923 caacactctcttttgaacactctttctaacactcactcttttattg 15508968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 484 - 657
Target Start/End: Complemental strand, 27243225 - 27243056
Alignment:
Q  484 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 583  Q
    ||||| |||||||||||||| |||||||||||||| | ||||| ||| ||||| |    ||||||||  || |||  |||||||||||||||  | |||     
T  27243225 tgctagcaacactctcttttgaacactctttctaatactcactctctcattgggt----taaatcaatgtgggtcatacactttggaaatggaacccaca 27243130  T
Q  584 taaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 657  Q
    |||||||||||| ||||||| ||||| ||| ||||| |||| ||| |||||||| | |||| ||||||||||||    
T  27243129 taaagtggtgggacatgcattgattttatccaataaaagagtgagtgttagagagagtgttcaaaagagagtgt 27243056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 491 - 671
Target Start/End: Original strand, 7640602 - 7640778
Alignment:
Q  491 aacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtg 590  Q
    ||||||||||||| ||||||||  | |||| |||||| ||||||||||    | ||||||| || ||| ||||||| |||||| |||  ||||||| |||    
T  7640602 aacactctcttttcaacactctcacaaacactcacttccttattggtt----tcaatcaaggtgagtctcacacttaggaaataggttccacttaatgtg 7640697  T
Q  591 gtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattcctc 671  Q
    || || ||| |||  |||||||| ||||||| ||| || |||||||  | ||||||||||||||||||  |||||||||||    
T  7640698 gtaggacatacattaatttcatccaataagaaagcaagtgttagagtgagtgttgaaaagagagtgtccctagcattcctc 7640778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 674
Target Start/End: Original strand, 49720054 - 49720188
Alignment:
Q  540 gtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaa 639  Q
    |||||||| ||| || ||| ||||||||||||||||||  |||||||| |||||||  || |||  |||| ||| ||||||  || ||| ||| |||| |    
T  49720054 gtttaaatgaaggtgggtctcacactttggaaatgggttccacttaaaatggtgggatatacattcatttaatccaataagcaagtgagtgtttgagaga 49720153  T
Q  640 atgttgaaaagagagtgtcattagcattcctcaaa 674  Q
     |||||||||| ||||||| |||||||||||||||    
T  49720154 gtgttgaaaagtgagtgtccttagcattcctcaaa 49720188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 657
Target Start/End: Original strand, 50661599 - 50661691
Alignment:
Q  565 tttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 657  Q
    |||||||||||  | ||| |||||||||||| ||||||| ||||| ||||||||| ||||  || |||||||| | |||| ||||||||||||    
T  50661599 tttggaaatggaacccacataaagtggtgggacatgcattgattttatctaataaaagagtaagtgttagagagagtgtttaaaagagagtgt 50661691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 482 - 538
Target Start/End: Original strand, 52123955 - 52124011
Alignment:
Q  482 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 538  Q
    ||||||| |||||||||||||| |||||||| ||||| | |||||||||||||||||    
T  52123955 aatgctagcaacactctcttttgaacactctctctaatactcactttcttattggtt 52124011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 475 - 538
Target Start/End: Original strand, 41451887 - 41451950
Alignment:
Q  475 caagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 538  Q
    |||||| ||||||| |||||||||||||| |||||||| ||||| | ||||| |||||||||||    
T  41451887 caagagcaatgctagcaacactctcttttgaacactctctctaatactcactctcttattggtt 41451950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 477 - 536
Target Start/End: Complemental strand, 43657938 - 43657879
Alignment:
Q  477 agagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 536  Q
    |||| ||||||| ||||||||||||||||||||| |||| |||| ||||||||| |||||    
T  43657938 agagtaatgctagcaacactctctttttaacactgtttccaacactcactttctaattgg 43657879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 476 - 639
Target Start/End: Original strand, 44225827 - 44225986
Alignment:
Q  476 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgg 575  Q
    ||||| ||||||| ||||| | |||||  ||||||||| | |||| ||||||| |||||||    ||||||| |||||| ||| ||||| ||| ||||||    
T  44225827 aagagtaatgctagcaacaatatctttccaacactcttccaaacattcactttattattgg----tttaaataaagctgggtctcacacattgaaaatgg 44225922  T
Q  576 gtctcacttaaagtggtggggcatgca-tagatttcatctaataagagagcgagggttagagaaa 639  Q
    ||  ||||||||||| |||| ||| || ||| ||||||| |||||||||| ||| ||| ||||||    
T  44225923 gttccacttaaagtgatgggacatacactag-tttcatccaataagagagtgagtgttggagaaa 44225986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 657
Target Start/End: Complemental strand, 8475262 - 8475165
Alignment:
Q  560 cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgt 657  Q
    ||||||||||||||||||  || |||||| |||| | ||| |||   ||||||| |||||||||| ||  ||||||||| ||||| ||||||||||||    
T  8475262 cacactttggaaatgggttccatttaaagcggtgagacatacattagtttcatccaataagagagtgaatgttagagaagatgtttaaaagagagtgt 8475165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 24734891 - 24734830
Alignment:
Q  477 agagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 538  Q
    |||| ||||||| |||||||||||||| |||||||| ||||| | ||||| |||||||||||    
T  24734891 agagcaatgctagcaacactctcttttgaacactctctctaatactcactctcttattggtt 24734830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 672
Target Start/End: Original strand, 37776800 - 37776887
Alignment:
Q  585 aaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattcctca 672  Q
    |||||||| || ||| ||| ||||||||||||||| |||| ||| | | |||||| |||||||||| ||||||   ||||||||||||    
T  37776800 aaagtggtaggacatacattgatttcatctaataaaagagtgagtgctggagaaagtgttgaaaagtgagtgttgctagcattcctca 37776887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 538
Target Start/End: Complemental strand, 20791475 - 20791421
Alignment:
Q  484 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 538  Q
    ||||| || ||||||||||| |||||||| ||||| | |||||||||||||||||    
T  20791475 tgctagcaccactctcttttgaacactctctctaatactcactttcttattggtt 20791421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 619
Target Start/End: Original strand, 43657069 - 43657127
Alignment:
Q  561 acactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataa 619  Q
    |||||||||||||||  ||||| |||||||||||| ||| ||| ||||||||| |||||    
T  43657069 acactttggaaatggaactcacataaagtggtgggacatacattgatttcatcaaataa 43657127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 478 - 536
Target Start/End: Original strand, 54186924 - 54186982
Alignment:
Q  478 gagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 536  Q
    |||||||||||  |||||||||||| ||||||||| ||||||| ||||| || ||||||    
T  54186924 gagaaatgctaagaacactctctttctaacactctctctaacattcactctcctattgg 54186982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 536
Target Start/End: Complemental strand, 54187117 - 54187055
Alignment:
Q  474 gcaagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 536  Q
    ||||||||| |||||   ||||||||||| ||||||||| ||||||| ||||| |||||||||    
T  54187117 gcaagagaagtgctatggacactctctttctaacactctctctaacactcactctcttattgg 54187055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 537
Target Start/End: Complemental strand, 14236198 - 14236145
Alignment:
Q  484 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggt 537  Q
    ||||| ||||||||| |||| |||||||||||||| | ||||||| ||||||||    
T  14236198 tgctagcaacactctgttttgaacactctttctaatactcacttttttattggt 14236145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 483 - 536
Target Start/End: Original strand, 27243047 - 27243100
Alignment:
Q  483 atgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 536  Q
    |||||| |||||||||||||| |||||||| ||||||| ||||| | |||||||    
T  27243047 atgctagcaacactctcttttgaacactctctctaacactcactcttttattgg 27243100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 672
Target Start/End: Complemental strand, 28529334 - 28529249
Alignment:
Q  587 agtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattcctca 672  Q
    ||||||||| ||| ||| ||||||||| ||||| |||| ||| | |||||| | |||||||||| ||||||   ||||||||||||    
T  28529334 agtggtgggacatacattgatttcatccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcattcctca 28529249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 536
Target Start/End: Original strand, 46575942 - 46576003
Alignment:
Q  475 caagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 536  Q
    |||||| ||||||| ||||||||||| || |||||||| || |||| ||||| |||||||||    
T  46575942 caagaggaatgctatcaacactctctcttcaacactctctcaaacactcactctcttattgg 46576003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 470 - 658
Target Start/End: Complemental strand, 28274980 - 28274796
Alignment:
Q  470 actagcaagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttgg 569  Q
    ||||||||||| | |||||  ||||||||||||| |||||||| |  ||||  |||||| |||    ||||||||||||||| || ||| ||||| ||||    
T  28274980 actagcaagagtagtgctagtaacactctcttttcaacactctcttaaacacccactttatta----ttggtttaaatcaaggtgggtctcacacattgg 28274885  T
Q  570 aaatgggtctcacttaaagtggtggggcatgca-tagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtc 658  Q
    ||||||||  ||||||| ||| |||| ||| || ||| ||||||| |||||||||| ||| |||||||| | ||||||||||||||||||    
T  28274884 aaatgggttccacttaaggtgatgggacatacactag-tttcatccaataagagagtgagtgttagagagagtgttgaaaagagagtgtc 28274796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 672
Target Start/End: Complemental strand, 18157210 - 18157034
Alignment:
Q  490 caacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagt 589  Q
    |||||||||||||| |||| ||| || || | |||||| ||||||||||      ||||||| || ||| ||||||||||||||| ||  ||||||||||    
T  18157210 caacactctcttttcaacattctctcaaatactcacttccttattggttt-----aatcaag-tgggtctcacactttggaaatgtgttccacttaaagt 18157117  T
Q  590 ggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattcctca 672  Q
    |||||| ||| |||  |||||||| ||||| | || | | |||||||| | ||||||||||||||||||  ||||||| ||||    
T  18157116 ggtgggacatacattaatttcatccaataaaaaagtgggtgttagagagagtgttgaaaagagagtgtccctagcatttctca 18157034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 537 - 676
Target Start/End: Complemental strand, 21977318 - 21977179
Alignment:
Q  537 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagag 636  Q
    ||||||||||||||| |  ||| ||||| ||||||||||||  |||||||||| ||||| ||| |||   ||||||| ||||||| || |||  ||||||    
T  21977318 ttggtttaaatcaagataggtctcacacattggaaatgggttccacttaaagtagtgggacatacattagtttcatcaaataagaaagtgagttttagag 21977219  T
Q  637 aaaatgttgaaaagagagtgtcattagcattcctcaaatt 676  Q
    | | ||||||||||||| ||||  ||||||| ||| ||||    
T  21977218 agagtgttgaaaagagaatgtccctagcattactctaatt 21977179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 637
Target Start/End: Original strand, 50424866 - 50425015
Alignment:
Q  484 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 583  Q
    ||||| ||||||||||||||   |||||| ||||||| ||||||| ||||||| |    ||||||||  || |||  |||||||||||||||  || ||     
T  50424866 tgctagcaacactctcttttaggcactctctctaacattcacttttttattgggt----taaatcaatgtgggtcatacactttggaaatggaacttaca 50424961  T
Q  584 taaagtggtggggcatgcatagatttcatctaataagagagcgagggttagaga 637  Q
    ||||||||||||| ||| || ||||| ||| ||||| |||| ||| ||||||||    
T  50424962 taaagtggtggggtatggattgattttatccaataaaagagtgagtgttagaga 50425015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 537 - 672
Target Start/End: Original strand, 5602609 - 5602743
Alignment:
Q  537 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagag 636  Q
    ||||||||||| ||  || ||| ||||||||||||||  || ||||||||||||||||| |||  ||  |||||||| ||||||||||  || |||||||    
T  5602609 ttggtttaaattaaagtgggtctcacactttggaaataagtttcacttaaagtggtgggacatatattaatttcatccaataagagagtaagtgttagag 5602708  T
Q  637 aaaatgttgaaaagagagtgtcattagcattcctca 672  Q
    ||| | || |||| ||||||||  || |||||||||    
T  5602709 aaagtatt-aaaaaagagtgtccctaacattcctca 5602743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 476 - 538
Target Start/End: Original strand, 39974193 - 39974255
Alignment:
Q  476 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 538  Q
    ||||| ||||||| |||||||||||||| |||| ||||||||| | ||||| |||||||||||    
T  39974193 aagagtaatgctaacaacactctcttttgaacattctttctaatactcactctcttattggtt 39974255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 30787396 - 30787448
Alignment:
Q  484 tgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 536  Q
    |||||| ||||||||||||| ||||||||||||||||  |||| |||||||||    
T  30787396 tgctactaacactctcttttcaacactctttctaacacacactctcttattgg 30787448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 672
Target Start/End: Complemental strand, 11430548 - 11430437
Alignment:
Q  561 acactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcat 660  Q
    |||||||||||||||  | ||| |||||||||||| ||| ||| ||||||| | ||||| |||| ||| | |||| | | || | ||||||||||||  |    
T  11430548 acactttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagaaagagtgctcaaaagagagtgttgt 11430449  T
Q  661 tagcattcctca 672  Q
    ||||||||||||    
T  11430448 tagcattcctca 11430437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 536
Target Start/End: Original strand, 13388335 - 13388389
Alignment:
Q  482 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 536  Q
    ||||||| |||||||||||||| || ||||| ||||||| ||||||| |||||||    
T  13388335 aatgctagcaacactctcttttgaatactctctctaacactcacttttttattgg 13388389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 595
Target Start/End: Original strand, 21970327 - 21970385
Alignment:
Q  537 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggg 595  Q
    ||||||||||||||| || ||| ||||| ||| ||||||||  ||||||||||||||||    
T  21970327 ttggtttaaatcaagatgggtctcacacattgaaaatgggttccacttaaagtggtggg 21970385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 671
Target Start/End: Original strand, 26980363 - 26980445
Alignment:
Q  589 tggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattcctc 671  Q
    ||||||| ||| ||| ||||||||| ||||| |||| |||  ||||||| | |||||||||| ||||||  ||||||||||||    
T  26980363 tggtgggacatacattgatttcatccaataatagagtgagtattagagagagtgttgaaaagtgagtgttgttagcattcctc 26980445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 667
Target Start/End: Original strand, 14340999 - 14341100
Alignment:
Q  566 ttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagca 665  Q
    ||||||||||||  |||||||||||||||| |||  ||   ||||||| ||||| | |  ||| |||||||| | ||||||||||| |||||||||| ||    
T  14340999 ttggaaatgggttccacttaaagtggtgggacatatattagtttcatccaataaaaaaatgagtgttagagagagtgttgaaaagaaagtgtcattaaca 14341098  T
Q  666 tt 667  Q
    ||    
T  14341099 tt 14341100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 484 - 667
Target Start/End: Complemental strand, 297016 - 296837
Alignment:
Q  484 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 583  Q
    ||||| |||||||||||||| |||||||| || |||| ||||||  |||    ||||||||||| ||| || ||| ||||| ||||||||||||  ||||    
T  297016 tgctagcaacactctcttttcaacactctctcaaacactcacttcatta----ttggtttaaatgaaggtgggtctcacacattggaaatgggttccact 296921  T
Q  584 taaagtggtggggcatgca-tagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcatt 667  Q
    ||| |||||||| ||| || ||| ||||||| |||||||||| ||| |||||||| | ||||||||||| ||||||  |||||||    
T  296920 taaggtggtgggacatacactag-tttcatccaataagagagtgagtgttagagagagtgttgaaaagaaagtgtccctagcatt 296837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 537 - 672
Target Start/End: Complemental strand, 12690383 - 12690248
Alignment:
Q  537 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagag 636  Q
    ||||||||||||||| || ||| |||||||||||||| | |  |||||||||||||| | |||||||  |||||||| ||||| ||||| || |||||||    
T  12690383 ttggtttaaatcaaggtgggtctcacactttggaaatagattccacttaaagtggtgagacatgcattaatttcatccaataaaagagcaagtgttagag 12690284  T
Q  637 aaaatgttgaaaagagagtgtcattagcattcctca 672  Q
    | | |||| |||| ||||||||  ||||||||||||    
T  12690283 agagtgtttaaaatagagtgtccctagcattcctca 12690248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 536 - 671
Target Start/End: Original strand, 29610285 - 29610420
Alignment:
Q  536 gttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttaga 635  Q
    |||||||||||| ||  || ||| ||||| || ||||| |||  |||||||||||||||| ||| |||  |||| | ||||||||  || ||| ||| ||    
T  29610285 gttggtttaaatgaatgtgggtctcacacattagaaattggttccacttaaagtggtgggacatacattcatttaaactaataagcaagtgagtgtttga 29610384  T
Q  636 gaaaatgttgaaaagagagtgtcattagcattcctc 671  Q
    || | |||||||||||||||||||||||||||||||    
T  29610385 gagagtgttgaaaagagagtgtcattagcattcctc 29610420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 562 - 658
Target Start/End: Complemental strand, 25326937 - 25326841
Alignment:
Q  562 cactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtc 658  Q
    ||||||||||||||||  |||||||||||||||| ||| ||| ||||| ||| ||||||| |  ||| |||  ||| | ||||||||||||||||||    
T  25326937 cactttggaaatgggttccacttaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtc 25326841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 562 - 658
Target Start/End: Complemental strand, 26159472 - 26159376
Alignment:
Q  562 cactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtc 658  Q
    ||||||||||||||||  |||||||||||||||| ||| ||| ||||| ||| ||||||| |  ||| |||  ||| | ||||||||||||||||||    
T  26159472 cactttggaaatgggttccacttaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtc 26159376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 491 - 534
Target Start/End: Original strand, 3984250 - 3984293
Alignment:
Q  491 aacactctctttttaacactctttctaacaatcactttcttatt 534  Q
    |||||||||||||||||||| ||||||||| |||||||||||||    
T  3984250 aacactctctttttaacactttttctaacattcactttcttatt 3984293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 476 - 526
Target Start/End: Original strand, 10060854 - 10060904
Alignment:
Q  476 aagagaaatgctaccaacactctctttttaacactctttctaacaatcact 526  Q
    ||||| ||||||| |||||||||||||| |||||||||| |||||||||||    
T  10060854 aagaggaatgctagcaacactctcttttgaacactctttataacaatcact 10060904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 621
Target Start/End: Original strand, 26170963 - 26171024
Alignment:
Q  560 cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataaga 621  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||| ||||| ||| |||||||    
T  26170963 cacactttggaaatgggttccacttaaagtggtgggtcatacattgattttatccaataaga 26171024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 671
Target Start/End: Original strand, 19090213 - 19090398
Alignment:
Q  482 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctca 581  Q
    ||||||| |||||||||||||| | |||||| |||| || ||||| | ||||||||||  || |||  ||    | || |||||||||||||||  | ||    
T  19090213 aatgctagcaacactctcttttgagcactctctctagcactcactcttttattggttgaattcaatgtag----gacctacactttggaaatggaaccca 19090308  T
Q  582 cttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattcctc 671  Q
    | |||||||||||| ||| ||| ||||||| | ||||| |||| | | | |||||| | || | ||||||||||||  ||||||||||||    
T  19090309 cataaagtggtgggacatacattgatttcacccaataaaagagtgggtgctagagagagtgctcaaaagagagtgttgttagcattcctc 19090398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 536
Target Start/End: Original strand, 32122790 - 32122850
Alignment:
Q  476 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 536  Q
    ||||||||||||| |||||||||||||| ||||||||||| | || ||||||  |||||||    
T  32122790 aagagaaatgctaacaacactctcttttcaacactctttccaccactcacttatttattgg 32122850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 538
Target Start/End: Complemental strand, 1392814 - 1392752
Alignment:
Q  476 aagagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 538  Q
    ||||| ||||||| |||||||||||||| ||||| || ||||| | ||||| |||||||||||    
T  1392814 aagagtaatgctagcaacactctcttttgaacaccctatctaatactcactctcttattggtt 1392752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 670
Target Start/End: Complemental strand, 6109955 - 6109869
Alignment:
Q  584 taaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattcct 670  Q
    ||||||||| || ||||||| ||||| ||  ||||| ||| |||| ||| |||||||||||||||||||| | |  |||||||||||    
T  6109955 taaagtggtaggacatgcattgattttattcaataaaagaacgagtgtttgagaaaatgttgaaaagagaatcttgttagcattcct 6109869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 484 - 667
Target Start/End: Complemental strand, 27654657 - 27654478
Alignment:
Q  484 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 583  Q
    ||||| |||||||||||||| |||||||| || |||| ||| ||| |||||||||    ||||||||| ||  |  ||||| ||||||||||||  ||||    
T  27654657 tgctagcaacactctcttttcaacactctctcaaacactcaatttattattggtt----taaatcaaggtggatttcacacgttggaaatgggttccact 27654562  T
Q  584 taaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcatt 667  Q
    |||||||||||| ||| |||   ||| ||| |||||||||  ||| |||||||| | ||||||||||||||||||  |||||||    
T  27654561 taaagtggtgggacatacattagttttatccaataagagaatgagtgttagagagagtgttgaaaagagagtgtccctagcatt 27654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 537 - 667
Target Start/End: Original strand, 24106696 - 24106826
Alignment:
Q  537 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagag 636  Q
    ||||||||||||||| || |||  |||| || |||||| ||  ||||||||||  |||| |||||||   ||||||| |||||||||| | | |||||||    
T  24106696 ttggtttaaatcaaggtgggtcttacacattagaaatgagttccacttaaagtcatgggacatgcattagtttcatccaataagagagtgggtgttagag 24106795  T
Q  637 aaaatgttgaaaagagagtgtcattagcatt 667  Q
    | | |||||||||||||||||||||||||||    
T  24106796 agagtgttgaaaagagagtgtcattagcatt 24106826  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 623
Target Start/End: Original strand, 51904616 - 51904751
Alignment:
Q  484 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 583  Q
    ||||| |||||||||||||| |||||||| ||||||| | || |||||||||| |    ||||||| | || ||| ||||||||| |||| |||  ||||    
T  51904616 tgctagcaacactctcttttcaacactctctctaacacttacattcttattggct----taaatcatggtgggtctcacactttgtaaataggttccact 51904711  T
Q  584 taaagtggtggggcatgcatagatttcatctaataagaga 623  Q
    ||||||| |||| ||| ||| |||||||||||||||||||    
T  51904712 taaagtgatgggtcatacattgatttcatctaataagaga 51904751  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 671
Target Start/End: Original strand, 42862414 - 42862604
Alignment:
Q  477 agagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatggg 576  Q
    |||| ||||||| |||||||||||||| | |||| | |||| || ||||| | ||||||| ||    |||||||  | |||  ||||||||| ||||||     
T  42862414 agaggaatgctagcaacactctcttttgagcactatatctagcactcactcttttattgggtg----aaatcaatttatgtttcacactttgaaaatgga 42862509  T
Q  577 tctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattcctc 671  Q
     | ||| |||||||||||| ||| ||| ||||||| | ||||| | || ||| | |||||||| || | |||||||||||| |||||||||||||    
T  42862510 acccacataaagtggtgggacatacattgatttcacccaataaaaaagtgagtgctagagaaagtgctcaaaagagagtgttattagcattcctc 42862604  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 482 - 538
Target Start/End: Complemental strand, 8109137 - 8109081
Alignment:
Q  482 aatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 538  Q
    ||||||| |||||||||||||| |||||||| ||||| | |||||||||||||||||    
T  8109137 aatgctagcaacactctcttttgaacactctctctaatactcactttcttattggtt 8109081  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 671
Target Start/End: Original strand, 5994868 - 5995051
Alignment:
Q  484 tgctaccaacactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcact 583  Q
    ||||| ||||| |||||||| |||||||| || |||| ||||||||| ||||  |    ||||||| | || ||| ||||| ||||||||||||  ||||    
T  5994868 tgctagcaacagtctcttttcaacactctctccaacattcactttctaattgact----taaatcatggtgggtctcacacattggaaatgggttccact 5994963  T
Q  584 taaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtcattagcattcctc 671  Q
    |||||||||| | ||| |||   ||| ||| |||||||||  ||| |||| ||| | ||||||||||||| ||||  ||||| |||||    
T  5994964 taaagtggtgagtcatacattagttttatccaataagagaatgagtgttaaagagagtgttgaaaagagaatgtccctagcaatcctc 5995051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 536
Target Start/End: Complemental strand, 16318981 - 16318926
Alignment:
Q  479 agaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattgg 536  Q
    |||||||||| |||||||||  ||| ||||||||||| |||||||||||||| |||||    
T  16318981 agaaatgctagcaacactct--tttcaacactctttccaacaatcactttctaattgg 16318926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 537 - 671
Target Start/End: Original strand, 45218566 - 45218698
Alignment:
Q  537 ttggtttaaatcaagctgtgtcc-cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttaga 635  Q
    ||||||||||||||| || |||| |||| |||||||||||||  |||||||||||||||| || |||| ||||||||| ||||| |||||||| ||||||    
T  45218566 ttggtttaaatcaaggtg-gtcctcacattttggaaatgggttccacttaaagtggtgggacacgcattgatttcatccaataaaagagcgagtgttaga 45218664  T
Q  636 gaaaatgttgaaaagagagtgtcattagcattcctc 671  Q
    |  | |||  |||||||||||||  |||||||||||    
T  45218665 g--agtgtataaaagagagtgtccctagcattcctc 45218698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 537 - 652
Target Start/End: Original strand, 9953718 - 9953833
Alignment:
Q  537 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagag 636  Q
    ||||||||||||||| ||  || ||||||||||||||| ||  |||||||||||||||| ||  |||  ||||||||  ||||||||| ||| ||||||     
T  9953718 ttggtttaaatcaaggtgaatctcacactttggaaatgagttccacttaaagtggtgggacacacattaatttcatcccataagagagtgagtgttagaa 9953817  T
Q  637 aaaatgttgaaaagag 652  Q
    |||||||| |||||||    
T  9953818 aaaatgtttaaaagag 9953833  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 33351155 - 33351079
Alignment:
Q  155 tgcagtattcttgtaagaactacagaatgggaaagcatcaaagctaatatgccatggttgttggatgccatagtttg 231  Q
    ||||||||||||||| |||| || || |  |||||||||||||| ||| ||||||||||||||||||||| ||||||    
T  33351155 tgcagtattcttgtacgaacaactgagtttgaaagcatcaaagcaaatttgccatggttgttggatgccacagtttg 33351079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 623
Target Start/End: Original strand, 28485430 - 28485516
Alignment:
Q  537 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagaga 623  Q
    ||||||||||| ||  || ||| ||||||||||||||||||  |||||||||||||||| ||| |||  |||||||| |||||||||    
T  28485430 ttggtttaaattaatgtgggtctcacactttggaaatgggttccacttaaagtggtgggacatacattaatttcatccaataagaga 28485516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 560 - 672
Target Start/End: Original strand, 45524948 - 45525060
Alignment:
Q  560 cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagtgtca 659  Q
    ||||||||||||||||||  |||| ||||||||||| ||| ||| ||||| ||| ||||||| |  ||| |||  ||| | ||||||||||||||||||     
T  45524948 cacactttggaaatgggttccactcaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtcc 45525047  T
Q  660 ttagcattcctca 672  Q
     | ||||||||||    
T  45525048 ctggcattcctca 45525060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 560 - 655
Target Start/End: Original strand, 27799278 - 27799373
Alignment:
Q  560 cacactttggaaatgggtctcacttaaagtggtggggcatgcatagatttcatctaataagagagcgagggttagagaaaatgttgaaaagagagt 655  Q
    ||||| |||||||| |||  |||||||||||||||| ||| |||   ||||||| ||||| |||| ||  |||||||||| |||||||||||||||    
T  27799278 cacacattggaaataggttccacttaaagtggtgggacatacattagtttcatcaaataaaagagtgatcgttagagaaattgttgaaaagagagt 27799373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 16983580 - 16983519
Alignment:
Q  477 agagaaatgctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 538  Q
    |||| ||||||| |||||||||||||| |||||||| ||||| | ||||| |||||||||||    
T  16983580 agagtaatgctagcaacactctcttttgaacactctctctaatactcactctcttattggtt 16983519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 655
Target Start/End: Original strand, 13105370 - 13105487
Alignment:
Q  537 ttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtggtggggcatgca-tagatttcatctaataagagagcgagggttaga 635  Q
    ||||||||||||||| || ||| ||||| |||||||||||| || |||||| | ||||| ||| || ||| ||||||||||||| ||||| || |||| |    
T  13105370 ttggtttaaatcaagatgggtctcacacattggaaatgggt-tcccttaaaatcgtgggacatacactag-tttcatctaataaaagagcaagtgttaaa 13105467  T
Q  636 gaaaatgttgaaaagagagt 655  Q
    || | || ||||||||||||    
T  13105468 gagagtgctgaaaagagagt 13105487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 33351323 - 33351260
Alignment:
Q  6 tagggtttaaatcctttcgtgttcatctttgcactgattgccaatgctacttatgtgggaaggt 69  Q
    ||||| |||||||||||| ||||| | |||||||||||||| ||| || |||| ||||||||||    
T  33351323 tagggcttaaatcctttcatgttcgtttttgcactgattgctaatacttcttacgtgggaaggt 33351260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 595
Target Start/End: Complemental strand, 24683743 - 24683644
Alignment:
Q  492 acactctctttttaacactctttctaacaatcactttcttattggttggtttaaatcaagctgtgtcccacactttggaaatgggtctcacttaaagtgg 591  Q
    |||||||||||| |||||| | || |||| ||||||||| ||||| |    ||||||| | || ||| |||| |||||||||||||  ||||||||||||    
T  24683743 acactctcttttcaacactatctccaacactcactttctgattggct----taaatcatgatgggtctcacattttggaaatgggttccacttaaagtgg 24683648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 538
Target Start/End: Complemental strand, 5980057 - 5980004
Alignment:
Q  485 gctaccaacactctctttttaacactctttctaacaatcactttcttattggtt 538  Q
    |||| |||||||||||||| |||||||| ||||| | ||||| |||||||||||    
T  5980057 gctagcaacactctcttttgaacactctctctaatactcactctcttattggtt 5980004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 534
Target Start/End: Original strand, 35151727 - 35151780
Alignment:
Q  481 aaatgctaccaacactctctttttaacactctttctaacaatcactttcttatt 534  Q
    |||||||| |||||||||||||| |||||||| | ||| | |||||||||||||    
T  35151727 aaatgctagcaacactctcttttgaacactctatttaatattcactttcttatt 35151780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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