View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15161_high_16 (Length: 250)
Name: NF15161_high_16
Description: NF15161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15161_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 28000766 - 28000546
Alignment:
| Q |
17 |
agttagtatatggtatatgatagctaatcatgtgctcttat-cagagaatcacatcaactaactctaggtagcgagtgatataagaaatataataagcta |
115 |
Q |
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| T |
28000766 |
agttagtatatggtatatgatagctaatcatgtgctcttatgcagaaaatcacatcaactaactctaggtagcgtgtgatataagaaatataataagcta |
28000667 |
T |
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| Q |
116 |
aactatagtttgatggtgagttgtatcctttcgttggagttgtattactgtcttcatgctgtaataatgacatcaattctaatattttttatagattcat |
215 |
Q |
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| T |
28000666 |
aactatagtttgatggtgagttgtatccttttgttggagttgtgttactgtcttcatgttgtaataatgacatcaattctaatattttttatagattcat |
28000567 |
T |
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| Q |
216 |
tttcaaatagaggtgagaata |
236 |
Q |
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| T |
28000566 |
tttcaaatagaggtgagaata |
28000546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 72 - 230
Target Start/End: Complemental strand, 27990254 - 27990097
Alignment:
| Q |
72 |
aactaactctaggtagcgagtgatataagaaatataataagctaaactatagtttgatggtgagttgtatcctttcgttggagttgtattactgtcttca |
171 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| ||||| |||||||||| | |
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| T |
27990254 |
aactaactataggtagcgtatgatataagaaatataataagctaaactataatttgatggtgagttgtatcattttgttgaagttgagttactgtcttga |
27990155 |
T |
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| Q |
172 |
tgctgtaataatgacatcaattctaatattttttatagattcattttcaaatagaggtg |
230 |
Q |
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| T |
27990154 |
tgctgtaataatgacatcaattttaata-tttttatagattcattttcaaatagaggtg |
27990097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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