View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15161_high_4 (Length: 445)
Name: NF15161_high_4
Description: NF15161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15161_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 428
Target Start/End: Original strand, 11929375 - 11929790
Alignment:
| Q |
17 |
aatcggcttcctatcaaggttgaagtatctgaacttggaagggaattatttggaaggcgacatcaatgaatcgcatctcactaatctttccaatttaaaa |
116 |
Q |
| |
|
|||| |||| |||||||||||| || ||||| |||| || |||||| ||||||| | |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11929375 |
aatctgcttgctatcaaggttggagcatctggtcttgaaaaggaattcattggaagccaacatcaatgaatcgcatctcactaatttttccaatttaaaa |
11929474 |
T |
|
| Q |
117 |
gcactgtacttaagttacaactcagtttccctaagaatt----tcacgtagttgggttcctcctttccagttaacatttttgatgctggcatcttgcaag |
212 |
Q |
| |
|
| ||| |||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
11929475 |
tcgttgtccttaagttacaactcagtttccctaacaattattttcacgtagatgggttcctcctttccagttaacatctttgaagttggcatcttgcaag |
11929574 |
T |
|
| Q |
213 |
ttgggttcaagctttcctagttggcttaaaactcaaagatccatattggaacttgatatttcggatgcagggattaatgactatgtaccagagtggattt |
312 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| || ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
11929575 |
ttggtttcaagctttcctagttggcttaaaactcacaggtccctattgaaacttgatatttctgatgcagggattaatgactatgtaccagaattgattt |
11929674 |
T |
|
| Q |
313 |
ggaacaactcacaatatatgttattcatgaatatgtctcacaacaatctcagaggtacaataccaaatttttcattcaagcttcctcaaaatccggctat |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
11929675 |
ggaacaactcacaatatatgttattcatgaatatgtctcacaataatctcagaggtacaataccaaatttttcattccagcttcctcaaaatccggcgat |
11929774 |
T |
|
| Q |
413 |
atttttgaattcaaat |
428 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11929775 |
atttttgaattcaaat |
11929790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 35 - 428
Target Start/End: Original strand, 11963683 - 11964076
Alignment:
| Q |
35 |
gttgaagtatctgaacttggaagggaattatttggaaggcgacatcaatgaatcgcatctcactaatctttccaatttaaaagcactgtacttaagttac |
134 |
Q |
| |
|
|||| ||||||| |||||||| || ||| ||||||||| || |||||||||| |||||||| ||| ||||||| || ||| | | | |||| ||| |
|
|
| T |
11963683 |
gttggagtatctaaacttggagggtaatgctttggaaggtgaaatcaatgaattacatctcaccaatttttccaaattgcaagtattatccttatcatac |
11963782 |
T |
|
| Q |
135 |
aactcagtttccctaagaatttcacgtagttgggttcctcctttccagttaacatttttgatgctggcatcttgcaagttgggttcaagctttcctagtt |
234 |
Q |
| |
|
|||||| | ||||||| || | | ||||||||||||||||||| | ||||||| ||||| | ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11963783 |
aactcattatccctaaagtttccccttagttgggttcctcctttcaaattaacatctttgaagttggcatcttgcaagttgggttcaagctttccaagtt |
11963882 |
T |
|
| Q |
235 |
ggcttaaaactcaaagatccatattggaacttgatatttcggatgcagggattaatgactatgtaccagagtggatttggaacaactcacaatatatgtt |
334 |
Q |
| |
|
|||| | || ||||||| |||| || ||||||||||||| ||| ||||| ||||||| |||||| | ||| ||||||||||||| || |||| | |
|
|
| T |
11963883 |
ggctccagacacaaagatacatagtgcaacttgatatttctgatacagggcttaatgatggtgtacccggatggttttggaacaactcgcatgctatgat |
11963982 |
T |
|
| Q |
335 |
attcatgaatatgtctcacaacaatctcagaggtacaataccaaatttttcattcaagcttcctcaaaatccggctatatttttgaattcaaat |
428 |
Q |
| |
|
||| ||||||||||| ||||||||||| | |||||||| ||| ||||| ||| |||||| | ||| | ||| | ||||||||||||||||| |
|
|
| T |
11963983 |
attaatgaatatgtcgcacaacaatctaatcggtacaattccagattttccatataagctttatgaaagttcgggtgtatttttgaattcaaat |
11964076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 199 - 428
Target Start/End: Complemental strand, 11832434 - 11832205
Alignment:
| Q |
199 |
tggcatcttgcaagttgggttcaagctttcctagttggcttaaaactcaaagatccatattggaacttgatatttcggatgcagggattaatgactatgt |
298 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| |||| |||||||||||| || |||||||||||| ||| ||||| |||||| || |
|
|
| T |
11832434 |
tggcatcttgcaagctgggttcaagctttccaagttggctccaaacacaaagatccatactgcgacttgatatttctgatacagggcttaatggtggcgt |
11832335 |
T |
|
| Q |
299 |
accagagtggatttggaacaactcacaatatatgttattcatgaatatgtctcacaacaatctcagaggtacaataccaaatttttcattcaagcttcct |
398 |
Q |
| |
|
||| || ||| ||||||||||||||||| ||||| |||| ||||||||||| ||||||||||| | |||||||| ||| ||||| ||| ||| ||||| |
|
|
| T |
11832334 |
acccgaatggttttggaacaactcacaacatatgatattaatgaatatgtcgcacaacaatctaatcggtacaattccagattttccatataagtttcct |
11832235 |
T |
|
| Q |
399 |
caaaatccggctatatttttgaattcaaat |
428 |
Q |
| |
|
|||| | ||||| ||| ||||||||||||| |
|
|
| T |
11832234 |
caaagttcggctgtatgtttgaattcaaat |
11832205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 199 - 428
Target Start/End: Complemental strand, 11851698 - 11851469
Alignment:
| Q |
199 |
tggcatcttgcaagttgggttcaagctttcctagttggcttaaaactcaaagatccatattggaacttgatatttcggatgcagggattaatgactatgt |
298 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| |||| |||||||||||| || |||||||||||| ||| ||||| |||||| || |
|
|
| T |
11851698 |
tggcatcttgcaagctgggttcaagctttccaagttggctccaaacacaaagatccatactgcgacttgatatttctgatacagggcttaatggtggcgt |
11851599 |
T |
|
| Q |
299 |
accagagtggatttggaacaactcacaatatatgttattcatgaatatgtctcacaacaatctcagaggtacaataccaaatttttcattcaagcttcct |
398 |
Q |
| |
|
||| || ||| ||||||||||||| | ||||||| |||| ||||||||||| ||||||||||| | |||||||| ||| ||||| ||| ||| || || |
|
|
| T |
11851598 |
acccgaatggttttggaacaactctctatatatgatattaatgaatatgtcgcacaacaatctaatcggtacaattccatattttccatataagttttct |
11851499 |
T |
|
| Q |
399 |
caaaatccggctatatttttgaattcaaat |
428 |
Q |
| |
|
|||| | ||||| ||||||| ||||||||| |
|
|
| T |
11851498 |
caaatttcggctgtattttttaattcaaat |
11851469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University