View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15161_high_5 (Length: 410)
Name: NF15161_high_5
Description: NF15161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15161_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 9 - 395
Target Start/End: Original strand, 32568640 - 32569029
Alignment:
| Q |
9 |
agcagagatatttagaattaagagagaagctaaagttcttgctacttaccttatacatccacatgccaaaatctttcatttcagtgaacaatattctcca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32568640 |
agcagagatatttagaattaagagagaagctaaagttcttgctacttaccttatacatccacatgccaaaatctttcatttcagtgaacaatattctcca |
32568739 |
T |
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| Q |
109 |
agctcttgactcattaaaatcactggaaatttccttgagtcaagccaaatttaagcaagctgttgat---tgtgaagaagaaagcattcctgcttgcttt |
205 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32568740 |
agctcttgactcgttaaaatcactggaaatttccttgagtcaagccaaatttaagcaagctgttgatgattgtgaagaagaaagcattcctgcttgcttt |
32568839 |
T |
|
| Q |
206 |
ggaccatcaagtttggaaagaaatgattgccttcgcatactaagtttcctttccaactcaatttcgcttcctgattttaaagtgagacatcaagtggaaa |
305 |
Q |
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| T |
32568840 |
ggaccatcaagtttggaaagaaaggattgccttcacatactaagtttcctttccaagtcaatttcgcttcctgattttaaagtgagacatcaagtggaaa |
32568939 |
T |
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| Q |
306 |
agttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaagagaagagtccggtgaaatttt |
395 |
Q |
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| T |
32568940 |
agttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaagagaagagtccggtgaaatttt |
32569029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 32645760 - 32645371
Alignment:
| Q |
9 |
agcagagatatttagaattaagagagaagctaaagttcttgctacttaccttatacatccacatgccaaaatctttcatttcagtgaacaatattctcca |
108 |
Q |
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||||||||| | ||||||||| |||||||||||||||||| ||| ||| |||| || |||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
32645760 |
agcagagatttggagaattaagtgagaagctaaagttcttgatacatacgttatgcacccacatgccaaaatctttaatttcagttaacaatatgctcca |
32645661 |
T |
|
| Q |
109 |
agctcttgactcattaaaatcactggaaatttccttgagtcaagccaaatttaagcaagctgt---tgattgtgaagaagaaagcattcctgcttgcttt |
205 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| |
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| T |
32645660 |
agctcttgacttgttaaaatcaatggaaatttccttgagtcaagccaaatttaagcaaactgtagatgattttgaagaagaaagcattcctgcttgcttt |
32645561 |
T |
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| Q |
206 |
ggaccatcaagtttggaaagaaatgattgccttcgcatactaagtttcctttccaactcaatttcgcttcctgattttaaagtgagacatcaagtggaaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32645560 |
ggaccatcaagtttggaaagaaatgattgccttcgcatactaagtttcctttccaactcaatttcgcttcctgaatttaaagtgagacatcaagtggaaa |
32645461 |
T |
|
| Q |
306 |
agttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaagagaagagtccggtgaaatttt |
395 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
32645460 |
agttttgcttgtcagatgctagtctaattttgtgtactgtatcaagttctatcaaactttactcagaagagacgagtccagtgaaatttt |
32645371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 363
Target Start/End: Complemental strand, 32531849 - 32531781
Alignment:
| Q |
295 |
tcaagtggaaaagttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaact |
363 |
Q |
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|||||||||||| ||||||||||| ||||| ||||| ||||||| |||||||||||||| || ||||| |
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| T |
32531849 |
tcaagtggaaaaattttgcttgtcgtatgcttgtctagttttgtgcactgtatcaagctcaattaaact |
32531781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 32614175 - 32614103
Alignment:
| Q |
302 |
gaaaagttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaag |
374 |
Q |
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||||||||||||||||| ||||| |||| ||||||||||| || || || ||||| ||||| ||| |||||| |
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| T |
32614175 |
gaaaagttttgcttgtctaatgcatgtctgattttgtgtacagtgtctagttctattaaactgtacacagaag |
32614103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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