View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15161_low_10 (Length: 282)
Name: NF15161_low_10
Description: NF15161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15161_low_10 |
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| [»] scaffold0402 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 3270 - 3022
Alignment:
| Q |
10 |
attatactacgatagaaggttttccttccaattgccttgcaattccgctggaaaatgatgactaaagaaaatgaggataagaaattgtagaaagttacta |
109 |
Q |
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| T |
3270 |
attatactaagatagaaggttttccttccacttgccttgcaattccgctggaaaatgatgactaaagaaaatgaggataagaaattgtagaaagttacta |
3171 |
T |
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| Q |
110 |
ttatttaactcaacaaatttcaatttaaaccattacataagagaagcagttaaaagaaaaatcaaagagcagtcc-aaagagtcatcaaattaaatgaca |
208 |
Q |
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| T |
3170 |
ttatttaactcaacaaatttcaattgaaaccattacataagagaaccagttaaaagaaaaatcaaagagcagtccaaaagagtcatcaaattaaatgaca |
3071 |
T |
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| Q |
209 |
tattgctccctttggggaatcagaggaaaattatatgtccgagaaatat |
257 |
Q |
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| T |
3070 |
tattgctccctttggggaatcataggaaaattatatgtccgagaaatat |
3022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 65 - 257
Target Start/End: Complemental strand, 15274 - 15081
Alignment:
| Q |
65 |
tgatgactaaagaaaatgaggataagaaattgtagaaagttactattatttaactcaacaaatttcaatttaaaccattacataagagaagcagttaaaa |
164 |
Q |
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| T |
15274 |
tgatgactaaagaaaatgaggataagaaattgtagaaagttactattatttaactcaacaaatttcaatttaaaccattacataagagaaccagttaaaa |
15175 |
T |
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| Q |
165 |
gaaaaatcaaagagcagtcc-aaagagtcatcaaattaaatgacatattgctccctttggggaatcagaggaaaattatatgtccgagaaatat |
257 |
Q |
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| T |
15174 |
gaaaaatcaaagagcagtccaaaagagtcatcaaattaaatgacatattgctccctttggggaatcataggaaaattatatgtccgagaaatat |
15081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 65 - 257
Target Start/End: Original strand, 17938669 - 17938862
Alignment:
| Q |
65 |
tgatgactaaagaaaatgaggataagaaattgtagaaagttactattatttaactcaacaaatttcaatttaaaccattacataagagaagcagttaaaa |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17938669 |
tgatgactaaagaaaatgaggataagaaattgtagaaagttactattatttaactcaacaaatttcaatttaaaccattacataagagaaccagttaaaa |
17938768 |
T |
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| Q |
165 |
gaaaaatcaaagagcagtcc-aaagagtcatcaaattaaatgacatattgctccctttggggaatcagaggaaaattatatgtccgagaaatat |
257 |
Q |
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| T |
17938769 |
gaaaaatcaaagagcagtccaaaagagtcatcaaattaaatgacatattgctccctttggggaatcataggaaaattatatgtccgagaaatat |
17938862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 65 - 257
Target Start/End: Complemental strand, 19336115 - 19335922
Alignment:
| Q |
65 |
tgatgactaaagaaaatgaggataagaaattgtagaaagttactattatttaactcaacaaatttcaatttaaaccattacataagagaagcagttaaaa |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
19336115 |
tgatgactaaagaaaatgaggataagaaattgtagaaagttactattatttaactcaacaaaattcaatttaaaccattacataagagaaccagttaaaa |
19336016 |
T |
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| Q |
165 |
gaaaaatcaaagagcagtcc-aaagagtcatcaaattaaatgacatattgctccctttggggaatcagaggaaaattatatgtccgagaaatat |
257 |
Q |
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| T |
19336015 |
gaaaaatcaaagagcagtccaaaagagtcatcaaattaaatgacatattgctccctttggggaatcagaggaaaattatatgtccgagaaatat |
19335922 |
T |
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