View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15161_low_11 (Length: 270)
Name: NF15161_low_11
Description: NF15161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15161_low_11 |
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| [»] scaffold0036 (3 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 22165 - 21928
Alignment:
| Q |
14 |
catcatcatcggacaaaaaactgttgagacaggtcgaatcgatggtaacataatcattgattcagggacaacattgacatatcttgaacaaaacttttac |
113 |
Q |
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| T |
22165 |
catcaccatcggacaaaaaactgttgagacaggtcgaaccgatggtaacataatcattgattcagggacaacattgacgtatcttgaacaaaacttttac |
22066 |
T |
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| Q |
114 |
aatgatttggtagcttccttgaagggagttattggtgttgaggaagtgaaagatcctcaatccccatataccttttgcttcacctttgaagatataacaa |
213 |
Q |
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| T |
22065 |
aatgatttggtagcttccttaaagggagttattggtgttgaggaagtgaaagatcctccatccccatataccttttgcttcacctttggagatataacaa |
21966 |
T |
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| Q |
214 |
aattccctaattttgtgtttcattttacgagagctgat |
251 |
Q |
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| T |
21965 |
agttccctaattttgtgtttcattttacgagagctgat |
21928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 14117 - 13894
Alignment:
| Q |
24 |
ggacaaaaaactgttgagacaggtcgaatcgatggtaacataatcattgattcagggacaacattgacatatcttgaacaaaacttttacaatgatttgg |
123 |
Q |
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| T |
14117 |
ggacaaaaaacggctcagtcaggtcaaactgatggtaatataatcattgattcaggtacaacattgacgtatcttgaaccaaaattttataacgatttca |
14018 |
T |
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| Q |
124 |
tagcttccttgaagggagttattggtgttgaggaagtgaaagatcctcaatccccatataccttttgcttcacctttgaagatataacaaaattccctaa |
223 |
Q |
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| T |
14017 |
tagcttcggtgaagggagttattggtgtagaggaagtaaaagatcctccatcaccatttaccttttgcttcacctttggagatctagcaaagttccctaa |
13918 |
T |
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| Q |
224 |
ttttgtgtttcattttacgagagc |
247 |
Q |
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| T |
13917 |
tttcgtgtttcatttcacgggagc |
13894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 41523 - 41658
Alignment:
| Q |
24 |
ggacaaaaaactgttgagacaggtcgaatcgatggtaacataatcattgattcagggacaacattgacatatcttgaacaaaacttttacaatgatttgg |
123 |
Q |
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||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| ||||| | ||||||| | |
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| T |
41523 |
ggacaaaaaacaattcagacaggtcaaatcgatggcaacataatcattgattcagggacaacgttgacgtatcttgaacaaccctttttcgatgattttg |
41622 |
T |
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| Q |
124 |
tagcttccttgaagggagttattggtgttgaggaag |
159 |
Q |
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| T |
41623 |
taacttccgtgaaggaagctattggtcttgaggaag |
41658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 26464326 - 26464184
Alignment:
| Q |
25 |
gacaaaaaactgttgagacaggtcgaatcgatggtaacataatcattgattcagggacaacattgacatatcttgaacaaaacttttacaatgatttggt |
124 |
Q |
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|||||||||| || ||||||||| ||| ||||| |||||||||||||||||||||||| |||||| ||||| |||||| ||||| | ||||||| | |
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| T |
26464326 |
gacaaaaaacaattcagacaggtcaaattgatggcaacataatcattgattcagggacagcattgatgtatctcgaacaaccctttttcgatgatttttt |
26464227 |
T |
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| Q |
125 |
agcttccttgaagggagttattggtgttgaggaagtgaaagat |
167 |
Q |
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| T |
26464226 |
agcttcggtgaaggaagttattgatattgaggaagtggaagat |
26464184 |
T |
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