View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15161_low_12 (Length: 268)
Name: NF15161_low_12
Description: NF15161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15161_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 17501161 - 17500906
Alignment:
| Q |
1 |
ttactttagttccctaaaacagtaaaactcagattgagtttttcatatggaataagagatattnnnnnnnnnntaat-----taactcctcaacttcctt |
95 |
Q |
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| T |
17501161 |
ttactttagttccctaaaacagtaaaactcagattgaatttttcatatggaataagagctattaaaaaaaaaaaaaaaaaaataactcctcaacttcctt |
17501062 |
T |
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| Q |
96 |
attcccttagcttaaacaagttggactctattatatttaatatttgtgcctcccaaataggcatgctagtcttagaaataataaaagtcatagaatccct |
195 |
Q |
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| T |
17501061 |
attcccttagcttaaacaagttggactctatcatatttaatatttgtgcctcccaaataggcatgctagtcttagaaataataaaagtcatagaatccct |
17500962 |
T |
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| Q |
196 |
tgtgataggttatatgttgtttgtacacaaaaatgtaaaggagatggtgtattaaa |
251 |
Q |
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| T |
17500961 |
tgtgataggttatatgttgtttgtacacaaaaatgtaaaggagatggtgtattaaa |
17500906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 17552053 - 17552308
Alignment:
| Q |
1 |
ttactttagttccctaaaacagtaaaactcagattgagtttttcatatggaataagagatattnnnnnnnnnntaat-----taactcctcaacttcctt |
95 |
Q |
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| T |
17552053 |
ttactttagttccctaaaacagtaaaactcagattgaatttttcatatggaataagagctattaaaaaaaaaaaaaaaaaaataactcctcaacttcctt |
17552152 |
T |
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| Q |
96 |
attcccttagcttaaacaagttggactctattatatttaatatttgtgcctcccaaataggcatgctagtcttagaaataataaaagtcatagaatccct |
195 |
Q |
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| T |
17552153 |
attcccttagcttaaacaagttggactctatcatatttaatatttgtgcctcccaaataggcatgctagtcttagaaataataaaagtcatagaatccct |
17552252 |
T |
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| Q |
196 |
tgtgataggttatatgttgtttgtacacaaaaatgtaaaggagatggtgtattaaa |
251 |
Q |
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| T |
17552253 |
tgtgataggttatatgttgtttgtacacaaaaatgtaaaggagatggtgtattaaa |
17552308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 1933210 - 1933076
Alignment:
| Q |
117 |
tggactctattatatttaatatttgtgcctcccaaataggcatgctagtcttagaaataataaaagtcatagaatcccttgtgataggttatatgttgtt |
216 |
Q |
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| T |
1933210 |
tggactctattatatttaatatttgtgcctcccaaataggcatgctagtcttagaaataataaaagtcatagaatcccttgtgataggttatatgttgtt |
1933111 |
T |
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| Q |
217 |
tgtacacaaaaatgtaaaggagatggtgtattaaa |
251 |
Q |
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| T |
1933110 |
tgtacacaaaaatgtaaaggagatggtgtattaaa |
1933076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 1938009 - 1937891
Alignment:
| Q |
1 |
ttactttagttccctaaaacagtaaaactcag-attgagtttttcatatggaataagagatattnnnnnnnnnntaattaactcctcaacttccttattc |
99 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
1938009 |
ttactttagttccctaaaacagtaaaactcagaattgagtttttcatatgggataagagatattaaaaaaaa---aattaactcctcaacttccttattc |
1937913 |
T |
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| Q |
100 |
ccttagcttaaacaagttggac |
121 |
Q |
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|||||||||||||||||||||| |
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| T |
1937912 |
ccttagcttaaacaagttggac |
1937891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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