View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15161_low_14 (Length: 265)

Name: NF15161_low_14
Description: NF15161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15161_low_14
NF15161_low_14
[»] chr2 (3 HSPs)
chr2 (14-248)||(26662196-26662436)
chr2 (81-149)||(26666243-26666311)
chr2 (80-149)||(26662004-26662073)
[»] chr1 (2 HSPs)
chr1 (14-246)||(22902454-22902695)
chr1 (14-149)||(46886001-46886135)
[»] chr6 (1 HSPs)
chr6 (88-248)||(19702430-19702600)
[»] scaffold0586 (2 HSPs)
scaffold0586 (14-84)||(2985-3055)
scaffold0586 (170-248)||(10181-10265)
[»] chr8 (3 HSPs)
chr8 (14-84)||(10638565-10638635)
chr8 (14-84)||(32716976-32717046)
chr8 (211-248)||(32717347-32717384)
[»] chr7 (1 HSPs)
chr7 (171-238)||(38935512-38935585)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 26662436 - 26662196
Alignment:
Q  14 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaatatatagtgattctaaatttgacaaatctca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26662436 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaatatatagtgattccaaatttgacaaatctca 26662337  T
Q  114 ctttcttagataatatttcacacttgggaatatcatgatggaaacaaaagaatgctaaattgtgcacagagatgtaacattgaacatcatactactt--- 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||       
T  26662336 ctttcttagataatatttcacacttggaaatatcatgatggaaacaaaagaatgtcaaattatgcacaaagatgtaacattgaacatcatactacttgac 26662237  T
Q  211 ---gattatgtaccacatcttgcatattttgactatcaagt 248  Q
       ||||||||||||||||||||| ||||| ||||||||||    
T  26662236 ttagattatgtaccacatcttgcagattttcactatcaagt 26662196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 26666311 - 26666243
Alignment:
Q  81 aatatatagtgattctaaatttgacaaatctcactttcttagataatatttcacacttgggaatatcat 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  26666311 aatatatagtgattccaaatttgacaaatctcactttcttagataatatgtcacacttgggaacatcat 26666243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 26662073 - 26662004
Alignment:
Q  80 aaatatatagtgattctaaatttgacaaatctcactttcttagataatatttcacacttgggaatatcat 149  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  26662073 aaatatataatgattccaaatttgacaaatctcactttcttagataatatgtcacatttgggaacatcat 26662004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 22902695 - 22902454
Alignment:
Q  14 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaatatatagtgattctaaatttgacaaatctca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  22902695 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaatacatagtgattccaaatttgacaaatctca 22902596  T
Q  114 ctttcttagataatatttcacacttgggaatatcatgatgg---aaacaaaagaatgctaaattgtgcacagagatgtaacattgaacatcatactactt 210  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  22902595 ctttcttagataatatttcacacttgggaatatcatgatggaaaaaacaaaagaatgtcaaattgtgcacagagatataacattgaacatcatactactt 22902496  T
Q  211 ------gattatgtaccacatcttgcatattttgactatcaa 246  Q
          |||||||||||||||||| || ||||| ||||||||    
T  22902495 gacttagattatgtaccacatcttacagattttcactatcaa 22902454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 46886001 - 46886135
Alignment:
Q  14 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaatatatagtgattctaaatttgacaaatctca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  46886001 ataatactatattagagacataggaattacaccatatataacattctaaacagaggacaaacatcc-aatatatagtgattctaaatttgacaaatctca 46886099  T
Q  114 ctttcttagataatatttcacacttgggaatatcat 149  Q
    ||||||||||||| |||| |||||||||||||||||    
T  46886100 ctttcttagataaaattttacacttgggaatatcat 46886135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 19702600 - 19702430
Alignment:
Q  88 agtgattctaaatttgacaaatctcactttcttagataatatttcacacttgggaatatcatgatgg---aaacaaaagaa-tgctaaattgtgcacaga 183  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||| ||||||||||||||    
T  19702600 agtgattttaaatttgacaaatttcactttcttagataatatttcacacttgggaatatcatgatggaaaaaacaaaagaattgccaaattgtgcacaga 19702501  T
Q  184 gatgtaacattgaacatcatactactt------gattatgtaccacatcttgcatattttgactatcaagt 248  Q
    ||| |||||||||||||||||||||||      ||||||||||||||||||||| ||||| ||||||||||    
T  19702500 gatataacattgaacatcatactacttgtcttagattatgtaccacatcttgcagattttcactatcaagt 19702430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 3055 - 2985
Alignment:
Q  14 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaata 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3055 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaata 2985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 10265 - 10181
Alignment:
Q  170 aaattgtgcacagagatgtaacattgaacatcatactactt------gattatgtaccacatcttgcatattttgactatcaagt 248  Q
    ||||||||||||||||| |||||||||||||||||||||||      ||||||||||||||||||||| ||||| ||||||||||    
T  10265 aaattgtgcacagagatataacattgaacatcatactacttgacttagattatgtaccacatcttgcagattttcactatcaagt 10181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 10638635 - 10638565
Alignment:
Q  14 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaata 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10638635 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaata 10638565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 32716976 - 32717046
Alignment:
Q  14 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaata 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32716976 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaata 32717046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 32717347 - 32717384
Alignment:
Q  211 gattatgtaccacatcttgcatattttgactatcaagt 248  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  32717347 gattatgtaccacatcttgcatattctcactatcaagt 32717384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 38935585 - 38935512
Alignment:
Q  171 aattgtgcacagagatgtaacattgaacatcatactactt------gattatgtaccacatcttgcatattttg 238  Q
    |||||||||||||||| |||||||||| | ||||||||||      ||||||||||| ||||||||| ||||||    
T  38935585 aattgtgcacagagatataacattgaataacatactacttgactcagattatgtacctcatcttgcagattttg 38935512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University