View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15161_low_3 (Length: 470)
Name: NF15161_low_3
Description: NF15161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15161_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 31242665 - 31243104
Alignment:
| Q |
13 |
aatatggtaattctaaattcatatgtttaatggacatccactttttctacactcgattaatcactttgtaaaaatatggttaattcaactcggtggataa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |
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| T |
31242665 |
aatatggtaattctaaattcatatgtttaatggacattcactttttccacactcgattaatcactt-gtaaaaatatggttaattcgactcggtagataa |
31242763 |
T |
|
| Q |
113 |
ttaattcgattcacgttaaaaattatggttaactacaattttttaacataaccaaattaacaatttattaaattgaatcaaccacatttttaaatgtgat |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242764 |
ttaattcgattcacgttgaaaattatggttaactacaattttttaacataaccaaattaacaatttattaaattgaatcaaccacatttttaaatgtgat |
31242863 |
T |
|
| Q |
213 |
aaactaaatgtcacggtaatgtacaaaaagtgtatgttatgtatcattgcttaacctaaatattcactgtgttttaatagttatcactctccggcctaca |
312 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242864 |
aaactaaatgtcagggtaatgtacaaaaagtgtatgttatgtatcattgcttaacctaaatattcactgtgttttaatagttatcactctccggcctaca |
31242963 |
T |
|
| Q |
313 |
tgtaacaaaataaacgtctttttcgtccaaataataagtacatgtatctgagctaaatataaattgaatacatgtactttttatttatgttaaaggtcgg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31242964 |
tgtaacaaaataaacgtctttttcgtccaaataataagtacatgtatctgagctaaatataaattgaatacatgtactttttatttatgttaaaggtcag |
31243063 |
T |
|
| Q |
413 |
agtagtgttattcatgctttaacatattttaacttggagat |
453 |
Q |
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| T |
31243064 |
agtagtgctattcatgctttaacatattttaacttggagat |
31243104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 132 - 394
Target Start/End: Original strand, 8254479 - 8254742
Alignment:
| Q |
132 |
aaattatggttaactacaattttttaacat-aaccaaattaacaatttattaaattgaatcaaccacatttttaaatgtgataaactaaatgtcacggta |
230 |
Q |
| |
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||||||||||||||||||||||| ||||| || |||||||| ||||| |||| ||||||||||||||||||| |||||||||||||| ||||| || |
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| T |
8254479 |
aaattatggttaactacaattttc-aacatgaagtaaattaactatttactaaactgaatcaaccacatttttagatgtgataaactaattgtcattcta |
8254577 |
T |
|
| Q |
231 |
atgtacaaaaagtgtatgt-tatgtatcattgcttaacctaaatattcactgtgttttaatagttatcactctccggcctacatgtaacaaaataaacgt |
329 |
Q |
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||||||||||||| |||| | | ||||||| ||||||| || | || ||| |||||||||| ||||||||| |||||||| ||||||||||| | || |
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|
| T |
8254578 |
atgtacaaaaagtagatgtctttatatcattacttaacc-aattttttactatgttttaataagaatcactctctggcctacaagtaacaaaatatatgt |
8254676 |
T |
|
| Q |
330 |
ctttttcgtccaaataataagtacatg-tatctgagctaaatataaattgaatacatgtacttttt |
394 |
Q |
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|
| T |
8254677 |
atttttggtccaaataaaaagtacatgttatctaagctaaatataaatcgaatacatgtacttttt |
8254742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 8254332 - 8254465
Alignment:
| Q |
13 |
aatatggtaattctaaattcata--tgtttaatggacatccactttttctacactcgattaatcactttgtaaaaatatggttaattcaactcggtggat |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
8254332 |
aatatggtaattctaaattcataaatgtttaatggacatccactttttctacacttaattaatcactt-gtaaaaatatggttaattcaacttagtggat |
8254430 |
T |
|
| Q |
111 |
aattaattcgattcacgttaaaaattatggttaac |
145 |
Q |
| |
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||||||||| ||||||||| |||||| |||||||| |
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|
| T |
8254431 |
aattaattcaattcacgttgaaaattgtggttaac |
8254465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 10257575 - 10257514
Alignment:
| Q |
81 |
taaaaatatggttaattcaactcggtggataattaattcgattcacgttaaaaattatggtt |
142 |
Q |
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||||||| |||||||||||| | | | |||||||||||| | ||||||| |||||||||||| |
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|
| T |
10257575 |
taaaaatgtggttaattcaattggatagataattaattcaactcacgttgaaaattatggtt |
10257514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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