View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15161_low_6 (Length: 359)
Name: NF15161_low_6
Description: NF15161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15161_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 41214619 - 41214950
Alignment:
| Q |
20 |
attgtattgtattgtcttctgaattgaaaaacatatatatctaccacaacttgtaaaatccatcttaatttgaacctttgtcatttccttgaatttggtc |
119 |
Q |
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| T |
41214619 |
attgtattgtattgtctcctgaattcaaaaacatatatatctaccacaacttgtaaaatccatcttaatttgaacctttgtcatttccttgtatttagtc |
41214718 |
T |
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| Q |
120 |
tagatgaaatgaacactgtccttttccatgtagttgttggataatagtgttacggcaaactttttctcaatttcttactaccatcttgcttgattctcca |
219 |
Q |
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| T |
41214719 |
tagatgaaatgaacactgtccttttccatgtagttgttggataatagtgttacggcaaactttttatcaatttcttattaccatcttgcttgattctcca |
41214818 |
T |
|
| Q |
220 |
ctcaagctaaaaagttttcagttttaccagtctttaccccggtcaaaacttccatcatcgataacatgtgcacttttcttgtctgccagatcacatatat |
319 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41214819 |
ctcaagctaaaaagttttcagttttaccagtc-ttaccccggacaaaacttccatcatcgataacatgtgcacttttcttgtctgccagatcacatatat |
41214917 |
T |
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| Q |
320 |
tattaattattctaaaatgattctatagaatta |
352 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
41214918 |
tattaattattctaaaatgattctatagaatta |
41214950 |
T |
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