View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15161_low_7 (Length: 353)
Name: NF15161_low_7
Description: NF15161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15161_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 45323621 - 45323294
Alignment:
| Q |
18 |
aggttgttagggttatggatttgggggattagattgagtttgtgaagtatgctgtgaagatgagtttagggaaagtgaatttaaggcttttggcagttga |
117 |
Q |
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| T |
45323621 |
aggttgttagggttatggatttgggggattagattgagtttgtgaagtatgctgtgaagatgagtttagggaaagtgaatttaaggcttttggcagttga |
45323522 |
T |
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| Q |
118 |
tctaattttgaatacgttgacttcgttgaaggatcctttaggggtcaattctatggatgaagaagaagaagggaatgtggtgttattaggtgttggtgaa |
217 |
Q |
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| T |
45323521 |
tctaattttgaatatgttgacttcgttgaaggatcctttaggggtcaattctatggatgaagaagaagaagggaatgtggtgttattaggtgttggtgaa |
45323422 |
T |
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| Q |
218 |
gcgttgttctgatgttagtgctatgattagagcgaaggctttgccgagtttggcgcaggttcttaggtttttatcaggtaatgataaggctagtgtggtt |
317 |
Q |
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| T |
45323421 |
gcgttgttctgattttagtgctatgattagagcgaaggctttgccgagtttggcgcaggttcttaggtttttatcaggtaatgataaggctagtgtggtt |
45323322 |
T |
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| Q |
318 |
ttgaaagagtttttgggttttgatgatg |
345 |
Q |
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| T |
45323321 |
ttgaaagagtttttgggctttgatgatg |
45323294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 14239505 - 14239167
Alignment:
| Q |
18 |
aggttgttagggttatggatttgggggattagattgagtttgtgaagtatgctgtgaagatgagtttagggaaagtgaatttaaggcttttggcagttga |
117 |
Q |
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| T |
14239505 |
aggttgttagggttatggcagtgggggatcagattgagtttgtgaagtatgttgtgaagatgagtcaagggaaaaccaatttaaggcttttggcggttga |
14239406 |
T |
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| Q |
118 |
tctaattttgaatacgttgacttcgttgaaggatcctttaggggtcaattctatggatgaagaagaa--gaa---------gggaatgtggtgttattag |
206 |
Q |
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||| ||||||||| |||| | ||||||||||||||||||||| ||||| | |||||| |||||| ||| ||| || ||||||| || |
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| T |
14239405 |
tcttattttgaatcttgtgacgttgttgaaggatcctttaggggtgaattcgacggatgaggaagaagggaatgtggcgtgggggatttggtgtttggag |
14239306 |
T |
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| Q |
207 |
gtgttggtgaagcgttgttctgatgttagtgctatgattagagcgaaggctttgccgagtttggcgcaggttcttaggtttttatcaggtaatgataagg |
306 |
Q |
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| T |
14239305 |
gcattggtgaagcgttgttcggatgttagtgctacgattcgcgggcgagcgatgtcgactctggcgcaggttgttgggtttttatcaggtagtgaaaagg |
14239206 |
T |
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| Q |
307 |
ctagtgtggttttgaaagagtttttgggttttgatgatg |
345 |
Q |
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| T |
14239205 |
ctagtgtggttttgaaagagtttatgggttttggtgatg |
14239167 |
T |
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