View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15162_low_1 (Length: 541)
Name: NF15162_low_1
Description: NF15162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15162_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 11860608 - 11860084
Alignment:
| Q |
1 |
gagtgatcttagtcctcccgtgacttgtttcttgctggcaacgaaaagtgacaatgtttgcaaggcagcgagcttacttatcccacttggcatttgagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||||| ||||||||||||||||||||||| |
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|
| T |
11860608 |
gagtgatcttagtcctcccgtgacttgtttcttgctggctacgaaaagtgacaatgtttgcaaagaagtaagcttatttatcccacttggcatttgagtt |
11860509 |
T |
|
| Q |
101 |
agatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11860508 |
agatccaagcatccctctaagtcaagatgattgaggcaactcaaatcgtccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatg |
11860409 |
T |
|
| Q |
201 |
tttgcaagtggataagatttgttatgcaactaggaagcttctccatgttgttatgggaaagatctagatacctcaagtacttcacatcctcaatagagct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11860408 |
tttgcaagtggataagatttgttatgcaactaggaagcttctctatgttgttatgggaaagatctagatacctcaagtacttcacatcctcaatagagct |
11860309 |
T |
|
| Q |
301 |
cggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatgttgtcacctttacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11860308 |
cggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttatcacaagttgatgttgtcacctttacc |
11860209 |
T |
|
| Q |
401 |
tcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacaccaaatcagggatctcacatgtaagat |
500 |
Q |
| |
|
|| | ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
11860208 |
tcgtacggaagccgagggttgttaatgttgtatggcaaaagaaaggtccttagtttctttgctttctgaaacaccaaatcagggatctcacatgaaagat |
11860109 |
T |
|
| Q |
501 |
ctaaagcaaaatcgaatgaaactcg |
525 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
11860108 |
ctaaagcaaaatcgaacgaaactcg |
11860084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 11828473 - 11827949
Alignment:
| Q |
1 |
gagtgatcttagtcctcccgtgacttgtttcttgctggcaacgaaaagtgacaatgtttgcaaggcagcgagcttacttatcccacttggcatttgagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||||||||||| |||||||||||||||||| |
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|
| T |
11828473 |
gagtgatcttagtcctcccgtgacttgtttcttgctggctacgaaaagtgacaatgtttgcaaagaagtgagcttacttattccacttggcatttgagtt |
11828374 |
T |
|
| Q |
101 |
agatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatg |
200 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | |
|
|
| T |
11828373 |
agatccaagcatccatctaagtcaagatggttaaggcaactcaaatcatccatgtcttttggcaattctttgaggacatgacatcgagacagtttcaacg |
11828274 |
T |
|
| Q |
201 |
tttgcaagtggataagatttgttatgcaactaggaagcttctccatgttgttatgggaaagatctagatacctcaagtacttcacatcctcaatagagct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11828273 |
tttgcaagtggataagatttgttatgcaactaggaagcttctccatgttgttatgtgaaagatctagatacctcaagtacttcacatcctcaatagagct |
11828174 |
T |
|
| Q |
301 |
cggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatgttgtcacctttacc |
400 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
11828173 |
tggaactgtcttgatccccaagtcatgtagatccaacacgcgtagcgagtacttgaaggtgtcgaagatcttatcacaagttgacgttgtcatctttacc |
11828074 |
T |
|
| Q |
401 |
tcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacaccaaatcagggatctcacatgtaagat |
500 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
11828073 |
tcgtgcggaagacgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctgtctgaaacaccgaatcagggatctcacatgaaagat |
11827974 |
T |
|
| Q |
501 |
ctaaagcaaaatcgaatgaaactcg |
525 |
Q |
| |
|
|||||||||||| ||| |||||||| |
|
|
| T |
11827973 |
ctaaagcaaaattgaacgaaactcg |
11827949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 526
Target Start/End: Complemental strand, 12039367 - 12038851
Alignment:
| Q |
7 |
tcttagtcctcccgtgacttgtttcttgctggcaacgaaaagtgacaatgtttgcaaggcagcgagcttacttatcccacttggcatttgagttagatcc |
106 |
Q |
| |
|
|||||||||||| || || | ||||||||| || || || |||||||||||||| || | || ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12039367 |
tcttagtcctcctgtaacgtatttcttgctagctacaaagagtgacaatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatcc |
12039268 |
T |
|
| Q |
107 |
aagcacccctctaagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgca |
206 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| ||||||| |
|
|
| T |
12039267 |
aagcatccctctaagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgca |
12039168 |
T |
|
| Q |
207 |
agtggataagatttgttatgcaactaggaagcttctccatgttgttatgggaaagatctagatacctcaagtacttcacatcctcaatagagctcggaac |
306 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
12039167 |
agtggataagagttgtgatgcaactaggaagcttctctatgttgttatgagaaagatctagatacctcaagtacttcacctcttcaatagagctcggaat |
12039068 |
T |
|
| Q |
307 |
cgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatgttgtcacctttacctcatgc |
406 |
Q |
| |
|
||||||||||||||| ||||| | ||| |||||||| | ||| |||||||||| |||||||| ||||| ||||||||||||| || |||||| | |
|
|
| T |
12039067 |
cgtcttgatccccaagtcatgcatatctaacacgcgca--tagc-tttgaaggtgttaaagatcttatcacaggttgatgttgtcatctgtacctcgtca |
12038971 |
T |
|
| Q |
407 |
ggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacaccaaatcagggatctcacatgtaagatctaaag |
506 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||||||||||| ||||| || ||||||| |||||| |||| |||||| |||| | |||||||| |
|
|
| T |
12038970 |
ggaagccgagggttgtcagtgttgtatggcaaaagaatggtcctcagttttttagctttctcaaacacacaatctgggatcccacacaacaaatctaaag |
12038871 |
T |
|
| Q |
507 |
caaaatcgaatgaaactcgt |
526 |
Q |
| |
|
|| |||| || ||||||||| |
|
|
| T |
12038870 |
cataatcaaacgaaactcgt |
12038851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 7 - 525
Target Start/End: Original strand, 11901952 - 11902470
Alignment:
| Q |
7 |
tcttagtcctcccgtga---cttgtttcttgctggcaacgaaaagtgacaatgtttgcaaggcagcgagcttacttatcccacttggcatttgagttaga |
103 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| || || |||||||||||||| || | || ||||||| |||| ||||||||||| ||||||||| |
|
|
| T |
11901952 |
tcttagtcctccagtgattacttgtttcttgctggccacaaagagtgacaatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttaga |
11902051 |
T |
|
| Q |
104 |
tccaagcacccctctaagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgttt |
203 |
Q |
| |
|
|||| ||| ||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| || | ||||||||||| |
|
|
| T |
11902052 |
tccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgttt |
11902151 |
T |
|
| Q |
204 |
gcaagtggataagatttgttatgcaactaggaagcttctccatgttgttatgggaaagatctagatacctcaagtacttcacatcctcaatagagctcgg |
303 |
Q |
| |
|
||||||||||||| || || ||| ||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | || |
|
|
| T |
11902152 |
gcaagtggataagcttagtgatggaactaggtagcttttctatgttgttatgagaaagatctagatacctcaagtacttcacctcctcaatagatgttgg |
11902251 |
T |
|
| Q |
304 |
aaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatgttgtcacctttacctca |
403 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||| ||| ||||| | |||||||||||| ||||||||| || || ||||||||||||| ||| ||||| |
|
|
| T |
11902252 |
aaccatcttaatccccaagtcatgtagatccagcacacgtag---ggacttgaaggtgttgaagatcttatcgcatgttgatgttgtcatcttcacctcg |
11902348 |
T |
|
| Q |
404 |
tgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacaccaaatcagggatctcacatgtaagatcta |
503 |
Q |
| |
|
|| ||||| ||||||||||| || |||| |||||||||||||| || |||||||||||||| | |||| ||| || |||||| |||||| ||||| | |
|
|
| T |
11902349 |
tgtggaaggcgagggttgttagtgctgtacggcaaaagaatggttctcagtttctttgctttatcgaacaacaagtctgggatcccacatgacagatcca |
11902448 |
T |
|
| Q |
504 |
aagcaaaatcgaatgaaactcg |
525 |
Q |
| |
|
|||||||||| |||||| |||| |
|
|
| T |
11902449 |
aagcaaaatcaaatgaagctcg |
11902470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 26 - 463
Target Start/End: Complemental strand, 11732228 - 11731791
Alignment:
| Q |
26 |
tgtttcttgctggcaacgaaaagtgacaatgtttgcaaggcagcgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaa |
125 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| || ||| ||| |||||| ||||||| ||||||||||||||||| ||||| | || || |
|
|
| T |
11732228 |
tgtttcttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaa |
11732129 |
T |
|
| Q |
126 |
gatggttgaggcaactcaaatcatccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataagatttgttat |
225 |
Q |
| |
|
||||| |||||| | ||| ||| | || |||||||||||||||||||||||||||||| | || |||||||| |||||||| |||||||| ||||| || |
|
|
| T |
11732128 |
gatggctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgat |
11732029 |
T |
|
| Q |
226 |
gcaactaggaagcttctccatgttgttatgggaaagatctagatacctcaagtacttcacatcctcaatagagctcggaaccgtcttgatccccaaatca |
325 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| ||||||||| |||||||||| |||| |||||||||||| | || || ||||||||||||| ||| |
|
|
| T |
11732028 |
gcaactaggaagcttctctatgttgttgtgggatagatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtca |
11731929 |
T |
|
| Q |
326 |
tgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatgttgtcacctttacctcatgcggaagctgagggttgttaa |
425 |
Q |
| |
|
||||||||||||||| || | |||||||||||| ||||||||| ||||| |||| || |||| ||| ||||| || |||||| |||||||||||| |
|
|
| T |
11731928 |
tgtagatccaacacg---tgcatggacttgaaggtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaa |
11731832 |
T |
|
| Q |
426 |
tg---ttgtatggcaaaagaatggtccttagtttctttgct |
463 |
Q |
| |
|
|| ||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
11731831 |
tgtttttgtatggcaataaaatggtcctcagtttctttgct |
11731791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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