View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15162_low_2 (Length: 499)

Name: NF15162_low_2
Description: NF15162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15162_low_2
NF15162_low_2
[»] chr4 (11 HSPs)
chr4 (204-477)||(3746195-3746467)
chr4 (17-145)||(3746008-3746136)
chr4 (21-140)||(3751829-3751948)
chr4 (17-133)||(3781198-3781314)
chr4 (17-138)||(3776885-3777006)
chr4 (30-133)||(3762823-3762926)
chr4 (17-116)||(3767214-3767313)
chr4 (394-477)||(13538252-13538336)
chr4 (385-477)||(31351661-31351754)
chr4 (396-435)||(38415494-38415533)
chr4 (396-453)||(35010382-35010439)
[»] chr8 (3 HSPs)
chr8 (386-470)||(1028751-1028836)
chr8 (398-453)||(28300139-28300194)
chr8 (386-430)||(19756417-19756461)
[»] chr1 (1 HSPs)
chr1 (386-473)||(2098777-2098864)
[»] chr7 (6 HSPs)
chr7 (395-476)||(37307687-37307769)
chr7 (394-477)||(9667228-9667312)
chr7 (394-430)||(27227261-27227297)
chr7 (390-452)||(23982068-23982130)
chr7 (395-452)||(24250144-24250201)
chr7 (394-430)||(47684484-47684520)
[»] chr3 (3 HSPs)
chr3 (395-477)||(9737574-9737657)
chr3 (385-430)||(52910376-52910421)
chr3 (394-430)||(11988928-11988964)
[»] chr2 (2 HSPs)
chr2 (385-430)||(37123631-37123676)
chr2 (394-430)||(8915639-8915675)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 204 - 477
Target Start/End: Original strand, 3746195 - 3746467
Alignment:
Q  204 tgttgggtaggcatggtggtggggttaagagtgattttgatgctaactctagagaagccaaagtagtgaaggagagaagagaataatggaagatgaatga 303  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  3746195 tgttgggtaggcatggtggtggggtta-gagtgattttgatgctaactctagagaaaccaaaatagtgaaggagagaagagaataatggaagatgaatga 3746293  T
Q  304 agtgtagctaagaggggtttgtttataagacaccaaatatagagggagaaaagtgaactaaaaaggacaaaagannnnnnnatcaggtaatctagtggct 403  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||       |||| |||| |||| ||||    
T  3746294 agtgtagccaagaggggtttgtttataagacaacaagtatagagggagaaaagtgaactaaaaaggacaaaagatttttttatcaagtaacctagcggct 3746393  T
Q  404 agattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatctctg 477  Q
    ||||| | ||||||||| | ||||||||||| |||| | |||||||||||||||||||||||||||||||||||    
T  3746394 agatttacacacattatatgtggagaaatgggaaatccggggttcgaacctcacccctacacataatatctctg 3746467  T

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Target: chr4; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 3746008 - 3746136
Alignment:
Q  17 ttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaacgaacaaaatca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  3746008 ttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttcttggttgtttaggtgtaacaatttggggtctattgaacgaacaaaatca 3746107  T
Q  117 taagtttcttctttttcaaatgatggtga 145  Q
    |||||||||||||||||||||||||||||    
T  3746108 taagtttcttctttttcaaatgatggtga 3746136  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 3751829 - 3751948
Alignment:
Q  21 ccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaacgaacaaaatcataag 120  Q
    ||||||| ||| ||||||||| ||||||||||||||||||| |||||||| |||||||||  |||||||||  ||||||||| ||||||||||||| |||    
T  3751829 ccactcaagatatcatgccaatagaatctgaaatgacttagtttttctttcttgtttaggcttaacaatttgcggtctattggacgaacaaaatcaaaag 3751928  T
Q  121 tttcttctttttcaaatgat 140  Q
    |||||| |||||| ||||||    
T  3751929 tttcttgtttttctaatgat 3751948  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 3781198 - 3781314
Alignment:
Q  17 ttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaacgaacaaaatca 116  Q
    ||||||||||| || |||||||||| |||||||||||||||||||||||||||| |||||||||  |||||||||  | ||||| | ||||||||||||     
T  3781198 ttttccactcaagacgtcatgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcg 3781297  T
Q  117 taagtttcttctttttc 133  Q
     |||| |||| ||||||    
T  3781298 aaagtgtcttgtttttc 3781314  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 3776885 - 3777006
Alignment:
Q  17 ttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaacgaacaaaatca 116  Q
    ||||||||| |  |||||||||||| | ||| ||||||||||||||||||| || |||||||||  |||||| ||  | ||||||| |||||||||||||    
T  3776885 ttttccactaactatgtcatgccaatataatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatca 3776984  T
Q  117 taagtttcttctttttcaaatg 138  Q
     | || ||||||||||| ||||    
T  3776985 aaggtatcttctttttctaatg 3777006  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 3762823 - 3762926
Alignment:
Q  30 atgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaacgaacaaaatcataagtttcttctt 129  Q
    |||||||||||  ||||||| ||||| ||||| ||||| || |||||||||  |||||| ||  ||||||||| ||||||||||||| |||||||||| |    
T  3762823 atgtcatgccagtagaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcat 3762922  T
Q  130 tttc 133  Q
    ||||    
T  3762923 tttc 3762926  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 3767214 - 3767313
Alignment:
Q  17 ttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaacgaacaaaatca 116  Q
    |||||||||||  |||||||||||| | ||| ||||||||||||||||||| || |||||||||  |||||| ||  | ||||||| |||||||||||||    
T  3767214 ttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatca 3767313  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 477
Target Start/End: Original strand, 13538252 - 13538336
Alignment:
Q  394 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 477  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  13538252 tctagtggctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 13538336  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 477
Target Start/End: Original strand, 31351661 - 31351754
Alignment:
Q  385 atcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctg 477  Q
    |||| ||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| | | ||||||||| | |||||| |||| | ||||||||    
T  31351661 atcaagtagtctagtggctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaattatctctg 31351754  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 435
Target Start/End: Original strand, 38415494 - 38415533
Alignment:
Q  396 tagtggctagattcaaacacattatgtatggagaaatgga 435  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  38415494 tagtggctagattcacacacattatgtatgaagaaatgga 38415533  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 453
Target Start/End: Original strand, 35010382 - 35010439
Alignment:
Q  396 tagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 453  Q
    ||||||||||||||| ||||||||||| ||||||| ||| |||| | | |||||||||    
T  35010382 tagtggctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaacc 35010439  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 470
Target Start/End: Complemental strand, 1028836 - 1028751
Alignment:
Q  386 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataat 470  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||| || | ||| | | |||||||||||| ||||| ||||||||    
T  1028836 tcaggtagtctagtggctagattcacacacattatgtatgaagaagtgaagaatccggagttcgaacctcagcccctgcacataat 1028751  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 453
Target Start/End: Complemental strand, 28300194 - 28300139
Alignment:
Q  398 gtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 453  Q
    ||||||||||||| ||||||||||||||||||| |||  ||| | |||||||||||    
T  28300194 gtggctagattcacacacattatgtatggagaagtggggaatccggggttcgaacc 28300139  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 19756417 - 19756461
Alignment:
Q  386 tcaggtaatctagtggctagattcaaacacattatgtatggagaa 430  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||    
T  19756417 tcaggtagcctagtggctagattcacacacattatgtgtggagaa 19756461  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 2098864 - 2098777
Alignment:
Q  386 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatc 473  Q
    |||| |||||||||||||||||||| ||||||||| | ||||||| |||| ||| | ||||||| |   | |||||||||||||||||    
T  2098864 tcagataatctagtggctagattcacacacattatatgtggagaagtggagaatccggggttcggattccgcccctacacataatatc 2098777  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 476
Target Start/End: Complemental strand, 37307769 - 37307687
Alignment:
Q  395 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctct 476  Q
    |||||||||||||||||||||||||| | ||||||| |||  ||| | | ||||||||| | ||||| |||||||||||||||    
T  37307769 ctagtggctagattcaaacacattatttgtggagaagtggggaatccggagttcgaaccccgaccccgacacataatatctct 37307687  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 477
Target Start/End: Original strand, 9667228 - 9667312
Alignment:
Q  394 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 477  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  9667228 tctagtggctggattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 9667312  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 27227261 - 27227297
Alignment:
Q  394 tctagtggctagattcaaacacattatgtatggagaa 430  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27227261 tctagtggctagattcaaacacattatgtgtggagaa 27227297  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 452
Target Start/End: Complemental strand, 23982130 - 23982068
Alignment:
Q  390 gtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 452  Q
    ||||||||||||||||||||| |||||||||||   |||||||||| ||| | | ||||||||    
T  23982130 gtaatctagtggctagattcacacacattatgtgcagagaaatggagaatccggagttcgaac 23982068  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 452
Target Start/End: Original strand, 24250144 - 24250201
Alignment:
Q  395 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 452  Q
    |||||| ||||||||| ||||||||||| |||| || |||| ||| ||||||||||||    
T  24250144 ctagtgactagattcacacacattatgtgtggaaaagtggagaatccagggttcgaac 24250201  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 47684484 - 47684520
Alignment:
Q  394 tctagtggctagattcaaacacattatgtatggagaa 430  Q
    |||| |||||||||||| |||||||||||||||||||    
T  47684484 tctattggctagattcacacacattatgtatggagaa 47684520  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 477
Target Start/End: Original strand, 9737574 - 9737657
Alignment:
Q  395 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaa-cctcacccctacacataatatctctg 477  Q
    ||||||| || ||||| ||||||||||| | ||||||| |||||| |  |||||||| ||| |||||| |||||||||||||||    
T  9737574 ctagtggttatattcacacacattatgtgtagagaaatagaaaattcgaggttcgaaccctgacccctgcacataatatctctg 9737657  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 52910376 - 52910421
Alignment:
Q  385 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 430  Q
    |||||||| ||||||| ||||||||| ||||||||||| |||||||    
T  52910376 atcaggtagtctagtgactagattcacacacattatgtgtggagaa 52910421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 11988928 - 11988964
Alignment:
Q  394 tctagtggctagattcaaacacattatgtatggagaa 430  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  11988928 tctagtggctagattcacacacattatgtgtggagaa 11988964  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 430
Target Start/End: Complemental strand, 37123676 - 37123631
Alignment:
Q  385 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 430  Q
    |||| ||| ||||||||||||||||| ||||||||||| |||||||    
T  37123676 atcaagtagtctagtggctagattcacacacattatgtgtggagaa 37123631  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 430
Target Start/End: Complemental strand, 8915675 - 8915639
Alignment:
Q  394 tctagtggctagattcaaacacattatgtatggagaa 430  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  8915675 tctagtggctagattcacacacattatttatggagaa 8915639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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