View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15162_low_3 (Length: 445)
Name: NF15162_low_3
Description: NF15162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15162_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 237 - 422
Target Start/End: Complemental strand, 43383943 - 43383752
Alignment:
| Q |
237 |
tggaaaagggaaattcaaatcaaatggtagtgttggtgttggtgttg------tgggttccactttttcccaatgacacctcttatgaccaccgagtgct |
330 |
Q |
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| T |
43383943 |
tggaaaagggaaattcaaatcaaatggtagtgttggtgttggtgttggtgttttgggttccactttttcccaatgacacctcttatgaccaccgagtgct |
43383844 |
T |
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| Q |
331 |
tgtccagtgctaaataccctcaaacatatgctacacttgtgtccgatgatgcagtttatcatctcattattattaaccgcttccccttccac |
422 |
Q |
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| T |
43383843 |
tgtccagtgctaaataccctcaaacatatgctacacttgtgtccgatgatgcagttaatcatctcattattattaaccgcttccccttccac |
43383752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 43384156 - 43383963
Alignment:
| Q |
10 |
agagagatgaaataagaggggtaattagaattaggatgcaaataaaatgaaacatacatgagcaacggtgat----gatgacctaataacttaactaagt |
105 |
Q |
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| T |
43384156 |
agagaaatgaaataagagaggtaattagaattagggtgcaaataaaatgaaacaaacatgagcaacggtgatcgatgatgacctaataacttaattaagt |
43384057 |
T |
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| Q |
106 |
agtaaaatatatattagaagagtaaagaagaagaaattaattaattaaagtcccaacctcaaatcaagagtgaggggagaagaagaatgattat |
199 |
Q |
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| T |
43384056 |
agtaaaatatatattagaagagtaaagaagaagaaattaattaattaaagtcccaacctcaaatcaagagtgaggggagaagaagaatgattat |
43383963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 237 - 427
Target Start/End: Complemental strand, 25870613 - 25870426
Alignment:
| Q |
237 |
tggaaaagggaaattcaaatcaaatggtagtgttggtgttggtgttgtgggttccactttttcccaatgacacctcttatgaccaccgagtgcttgtcca |
336 |
Q |
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| T |
25870613 |
tggaaaagggaaattcaaatcaaatggtagtgttggtgtcg------tgggttcccctttatcccaatgacacctcttatgaccaccgagtgcttgtcca |
25870520 |
T |
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| Q |
337 |
gtgctaaataccctcaaacatatgctacacttgtgtccgatgatgcagt--ttatca-tctcattattattaaccgcttccccttccacgtttc |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | | |||| |||||||| |||||||||| ||||||| |
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| T |
25870519 |
gtgctaaataccctcaaacatatgctacacttgtgtccgatgatgcagtcattattattattattactattaacctcttccccttcaacgtttc |
25870426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 25870684 - 25870636
Alignment:
| Q |
148 |
aattaaagtcccaacctcaaatcaagagtgaggggagaagaagaatgat |
196 |
Q |
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| T |
25870684 |
aattaaagtcacaacctcaaatgaagagtgaggggagaagaagaatgat |
25870636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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