View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15162_low_4 (Length: 379)
Name: NF15162_low_4
Description: NF15162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15162_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 278
Target Start/End: Original strand, 11749468 - 11749733
Alignment:
| Q |
22 |
atttgttgaatgtgaatgaatgatgcatatctctttgcaacgccattgtaaaactgtctgttcctatca---------tcatcatcatcactttcagttc |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
11749468 |
atttgttgaatgggaatgaatgatgcatatctctttgcaacgccatcgtaaaactgtttgttcctatcatcatcatcatcatcatcatcactttcagttc |
11749567 |
T |
|
| Q |
113 |
cactttcattgctaacgatataatcaggcaatggattttgattctctatcatttctttcctctaatcatcgtcatcagtgacgtcactgataacgatgat |
212 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11749568 |
cactttcattgctaacgatataaccaagcaatggattttgattctctatcatttctttcctctgatcatcgtcatcagtgacgtcactgataacgatgat |
11749667 |
T |
|
| Q |
213 |
gttgttatattcgaaaccgtgaccatgttgttgttgggttatagaagctacattgctgagtggagg |
278 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11749668 |
gttgttatattcgaaaccgtggccatgttgttgttgggttatagaagctacattgctgagtggagg |
11749733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 11749767 - 11749805
Alignment:
| Q |
324 |
ttgtttttggttggtattggaattttcagttcttgggtc |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11749767 |
ttgtttttggttggtattggaattttcagttcttgggtc |
11749805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University