View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15162_low_5 (Length: 375)

Name: NF15162_low_5
Description: NF15162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15162_low_5
NF15162_low_5
[»] chr4 (2 HSPs)
chr4 (19-368)||(3294512-3294861)
chr4 (66-111)||(49496851-49496895)
[»] chr2 (2 HSPs)
chr2 (66-226)||(28502839-28502999)
chr2 (66-111)||(19710404-19710448)
[»] chr1 (2 HSPs)
chr1 (66-213)||(51444399-51444547)
chr1 (66-111)||(24274818-24274862)
[»] chr7 (2 HSPs)
chr7 (65-133)||(10531045-10531113)
chr7 (158-231)||(10531108-10531181)
[»] scaffold0657 (1 HSPs)
scaffold0657 (66-111)||(5552-5596)
[»] chr6 (2 HSPs)
chr6 (66-111)||(25003813-25003857)
chr6 (66-111)||(34635177-34635221)
[»] chr3 (1 HSPs)
chr3 (66-111)||(16473947-16473991)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 3294861 - 3294512
Alignment:
Q  19 ggcatgacacacactcaagtaacacaaattgaaagtaaaaatggtaattacattattacccccttaagaattgtttcgtcctcgaaactagaagatctca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3294861 ggcatgacacacactcaagtaacacaaattgaaagtaaaaatggtaattacattattacccccttaagaattgtttcgtcctcgaaactagaagatctca 3294762  T
Q  119 aaataaagataaagtttactatttaaatgataataaaaataaagtagacttaaacatagatagaataaaatatgtgtgtatacgtttaaagaaaatacta 218  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3294761 aaataaagataaagtttactatttcaatgataataaaaataaaatagacttaaacatagatagaataaaatatgtgtgtatacgtttaaagaaaatacta 3294662  T
Q  219 ggatcttacactcattcacacccacatggatgcaaaaatgaatgaatttaacacttactcatttacactaacttaaactttgcatttgagttaagggatc 318  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3294661 ggatcttacactcattcacaccgacatggatgcaaaaatgaaagaatttaacacttactcatttacactaacttaaactttgcatttgagtcaagggatc 3294562  T
Q  319 cttacaacgacaattctctatttggagattcgcaggtggtattcttttca 368  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3294561 cttacaacgacaattctctatttggagattcgcaggtggtatttttttca 3294512  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 49496895 - 49496851
Alignment:
Q  66 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 111  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  49496895 ttacattattacccccttaa-aatagtttcgtcctcgaaactagaa 49496851  T

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Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 66 - 226
Target Start/End: Original strand, 28502839 - 28502999
Alignment:
Q  66 ttacattattacccccttaagaattgtttcgtcctcgaaactagaagatctcaaaataaagataaagtttactatttaaatgataataaaaataaagtag 165  Q
    |||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||| || | ||| |||||||||||||||||||||||||||||||||     
T  28502839 ttacattattacccccttaaaaatagtttcatcctcgaaactagaagatctaaaaaaaagggtaatgtttactatttaaatgataataaaaataaagtac 28502938  T
Q  166 acttaaacatagatagaataaaatatgtgtgtatacgtttaaagaaaatactaggatctta 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28502939 acttaaacatagatagaataaaatatgtgtgtatacgtttaaagaaaatactaggatctta 28502999  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 19710404 - 19710448
Alignment:
Q  66 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 111  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  19710404 ttacattattacccccttaa-aatagtttcgtcctcgaaactagaa 19710448  T

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Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 66 - 213
Target Start/End: Original strand, 51444399 - 51444547
Alignment:
Q  66 ttacattattacccccttaagaattgtttcgtcctcgaaactagaagatctc-aaaataaagataaagtttactatttaaatgataataaaaataaagta 164  Q
    |||||||||||||||||||| |||  |||||||| |||||||| |||||||| ||||||||| | ||||| ||||||||||  | ||| |||||||||||    
T  51444399 ttacattattacccccttaaaaataatttcgtccccgaaactaaaagatctctaaaataaaggtcaagttcactatttaaacaagaatgaaaataaagta 51444498  T
Q  165 gacttaaacatagatagaataaaatatgtgtgtatacgtttaaagaaaa 213  Q
    |||||||| |||||||||||||||||||| |  |||  |||||||||||    
T  51444499 gacttaaatatagatagaataaaatatgtatacatatttttaaagaaaa 51444547  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 24274862 - 24274818
Alignment:
Q  66 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 111  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  24274862 ttacattattacccccttaa-aatagtttcgtcctcgaaactagaa 24274818  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 10531045 - 10531113
Alignment:
Q  65 attacattattacccccttaagaattgtttcgtcctcgaaactagaagatctcaaaataaagataaagt 133  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  10531045 attacattattacccccttaaaaattgtttcgtcctcgaaactagaagctctcaaaataaaggtaaagt 10531113  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 10531108 - 10531181
Alignment:
Q  158 taaagtagacttaaacatagatagaataaaatatgtgtgtatacgtttaaagaaaatactaggatcttacactc 231  Q
    ||||||| |||||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  10531108 taaagtaaacttaagcatagatagaataaaatatgtatgtatatgtttaaagaaaattctaggatcttacactc 10531181  T

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Target: scaffold0657 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 5552 - 5596
Alignment:
Q  66 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 111  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||    
T  5552 ttacattcttacccccttaa-aatagtttcgtcctcgaaactagaa 5596  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 25003857 - 25003813
Alignment:
Q  66 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 111  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||    
T  25003857 ttacattcttacccccttaa-aatagtttcgtcctcgaaactagaa 25003813  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 34635221 - 34635177
Alignment:
Q  66 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 111  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||    
T  34635221 ttacattcttacccccttaa-aatagtttcgtcctcgaaactagaa 34635177  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 16473991 - 16473947
Alignment:
Q  66 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 111  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||    
T  16473991 ttacattcttacccccttaa-aatagtttcgtcctcgaaactagaa 16473947  T

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