View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15162_low_6 (Length: 357)
Name: NF15162_low_6
Description: NF15162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15162_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 54199491 - 54199816
Alignment:
| Q |
18 |
gttacttacatttggtacaaaatatattgcaaagatatgcatccctaataagttaggtgatagcatgcttccatgtaagaagggggaagttgaagaagag |
117 |
Q |
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| T |
54199491 |
gttacttacatttggtacaaaatatattgcaaagatatgcatccctaataagttaggtgatagcatgcttccatgtaagaagggggaagttgaagaagag |
54199590 |
T |
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| Q |
118 |
tcaaaagatgataggagaaggttactttcttttgattttgatgagaatgtggtatggcgtcgaggtttggcacctgcagccggtggtgatgactattgct |
217 |
Q |
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| T |
54199591 |
tcaaaagatgataggagaaggttactttcttttgattttgatgagaatgtggtatggcgtcgaggtttggcacctgcagccggtggtgatgactattgct |
54199690 |
T |
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| Q |
218 |
cacataaagtgagcaagattgtataaatatttcatatttataatttaagtatatccttaattttataattctgtgttactataatgaaatatatatgcag |
317 |
Q |
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| T |
54199691 |
caaataaagtgagcaagattgtataaatatttcatatttataatttaagtatatccttaa--ttataattctttgttactataatgaaatatatatgcag |
54199788 |
T |
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| Q |
318 |
ggtcaagtgcctttaatatctcaatctg |
345 |
Q |
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| T |
54199789 |
ggtcaagtgcctttaatatctcaatctg |
54199816 |
T |
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