View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15162_low_7 (Length: 314)
Name: NF15162_low_7
Description: NF15162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15162_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 51688485 - 51688793
Alignment:
| Q |
18 |
attagggacaaggtaacatgcatcatgtacaaaagtacaaccacagcaaacatttaagtactttgcatgctggcgctaaatttgcatt------------ |
105 |
Q |
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| T |
51688485 |
attagggacaaggtaacatgcatcatgtacaaaagtacaaccacagcaaacatttaagtactttgtatgctggcgctaaatttgcattttagttacacct |
51688584 |
T |
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| Q |
106 |
ctctctctttcccacgggtccttaatcagtgcccaggatactagttagcattttccatattttttaagtcacaatagaaaatattgtagtaatttgtttg |
205 |
Q |
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| T |
51688585 |
ctctctctttcccacgggtccttaattagtgcccagagtactagttagcattttccatattttttaagtcacaatagaaaatattgtagtaatttgtttg |
51688684 |
T |
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| Q |
206 |
atgtatcaaaattaaactctaataatagtgcctgaaattctccattgctccttcatttattttggcattgaagaatctatgtcctctctttgtcgaaaac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51688685 |
atgtatcaaaattaaactctaataatagtgcctgaaattctccattgctccttcatttattttggcattgaagaatctatgtcctctctttgtcaaaaac |
51688784 |
T |
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| Q |
306 |
aaagcaatt |
314 |
Q |
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| T |
51688785 |
aaagcaatt |
51688793 |
T |
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