View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_high_104 (Length: 259)
Name: NF15163_high_104
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_104 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 36992780 - 36992529
Alignment:
| Q |
1 |
ttagactatacaatgtcgtaaaatgtcgacataagtgtgtattggacattggttttgaagtgtttaagcatagaaagtcaataagctaggagggaaaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36992780 |
ttagactatacaatgtcgtaaaatgtcgacataagtgtgtattggacattggttttgaagtgtttaagcatagaaagacaataagctaggagggaaaaac |
36992681 |
T |
|
| Q |
101 |
atgatttcagtgtgctaaatgacgatannnnnnnnnnnnnnnnnnnnnnnnaaaatgtacagctcaataaagtcttattatgnnnnnnnnnnnntacagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36992680 |
atgatttcagtgtgctaaatgacgatatttttttctttttattttatttttaaaatgtacagctcaataaagtcttattatgaaaaacaaaaaatacagc |
36992581 |
T |
|
| Q |
201 |
tcaaattcatagtcaactctttcagtttcgatatttggaaatccagaattat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36992580 |
tcaaattcatagtcaactctttcagtttcgatatttggaaatccagaattat |
36992529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 37018220 - 37017969
Alignment:
| Q |
1 |
ttagactatacaatgtcgtaaaatgtcgacataagtgtgtattggacattggttttgaagtgtttaagcatagaaagtcaataagctaggagggaaaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37018220 |
ttagactatacaatgtcgtaaaatgtcgacataagtgtgtattggacattggttttgaagtgtttaagcatagaaagacaataagctaggagggaaaaac |
37018121 |
T |
|
| Q |
101 |
atgatttcagtgtgctaaatgacgatannnnnnnnnnnnnnnnnnnnnnnnaaaatgtacagctcaataaagtcttattatgnnnnnnnnnnnntacagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37018120 |
atgatttcagtgtgctaaatgacgatatttttttctttttattttatttttaaaatgtacagctcaataaagtcttattatgaaaaacaaaaaatacagc |
37018021 |
T |
|
| Q |
201 |
tcaaattcatagtcaactctttcagtttcgatatttggaaatccagaattat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37018020 |
tcaaattcatagtcaactctttcagtttcgatatttggaaatccagaattat |
37017969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University