View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_high_108 (Length: 255)

Name: NF15163_high_108
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_high_108
NF15163_high_108
[»] chr1 (9 HSPs)
chr1 (16-255)||(9377432-9377671)
chr1 (16-255)||(9236562-9236801)
chr1 (22-254)||(8979356-8979588)
chr1 (22-116)||(8862094-8862188)
chr1 (157-251)||(8962159-8962253)
chr1 (149-254)||(8926798-8926903)
chr1 (202-251)||(8939277-8939326)
chr1 (49-134)||(9125654-9125739)
chr1 (187-251)||(9466892-9466956)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 9377432 - 9377671
Alignment:
Q  16 ttcttggaggattatagagcaatgaaaccaacaagatttacttatgctgatattaaaagaataacaaatggttttaaggaaaatttaggagaaggagctc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9377432 ttcttggaggattatagagcaatgaaaccaacaagatttacttatgctgatattaaaagaataacaaatggttttaaggaaaatttaggagaaggagctc 9377531  T
Q  116 atggagccgtattcaaaggcatgctatcccaagaaattttggttgctgtgaaggtgctcaatgagacacaaggagatggaaacgatttcatcaatgaagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9377532 atggagccgtattcaaaggcatgctatcccaagaaattttggttgctgtgaaggtgctcaatgagacacaaggagatggaaacgatttcatcaatgaagt 9377631  T
Q  216 ccgaactatgggaaaaattcatcatttcaatgttgttcgc 255  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9377632 ccgaactatgggaaaaattcatcatttcaatgttgttcgc 9377671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 9236801 - 9236562
Alignment:
Q  16 ttcttggaggattatagagcaatgaaaccaacaagatttacttatgctgatattaaaagaataacaaatggttttaaggaaaatttaggagaaggagctc 115  Q
    ||||| |||||||| || ||| ||||||| |||||||| ||||||||||||||||| |||||||||||||| || || || | |||||||||||||||||    
T  9236801 ttcttagaggattacagggcattgaaacctacaagattcacttatgctgatattaagagaataacaaatggcttcaaagagagtttaggagaaggagctc 9236702  T
Q  116 atggagccgtattcaaaggcatgctatcccaagaaattttggttgctgtgaaggtgctcaatgagacacaaggagatggaaacgatttcatcaatgaagt 215  Q
    ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  9236701 atggatccgtgttcaaaggcatgctctcccaagaaattttggttgctgtgaaggttctcaatgaaacacaaggagatggaaacgatttcatcaacgaagt 9236602  T
Q  216 ccgaactatgggaaaaattcatcatttcaatgttgttcgc 255  Q
    | ||||||||||||||||||||||| ||||||||||||||    
T  9236601 cggaactatgggaaaaattcatcatgtcaatgttgttcgc 9236562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 8979588 - 8979356
Alignment:
Q  22 gaggattatagagcaatgaaaccaacaagatttacttatgctgatattaaaagaataacaaatggttttaaggaaaatttaggagaaggagctcatggag 121  Q
    |||||||||||||||    |||| || |||||| ||| ||||||||| |||||||| |||||||| |||||||||||  |||||||||||||||| |||     
T  8979588 gaggattatagagcacaacaacctactagattttcttttgctgatataaaaagaatcacaaatgggtttaaggaaaaactaggagaaggagctcacggaa 8979489  T
Q  122 ccgtattcaaaggcatgctatcccaagaaattttggttgctgtgaaggtgctcaatgagacacaaggagatggaaacgatttcatcaatgaagtccgaac 221  Q
      ||||| ||||| |  || ||  | || ||| |||||||||||||| | |||||  | ||| ||||||| || || || ||||| |  |||||  |||     
T  8979488 aagtatttaaaggaaaactctcaaatgagattctggttgctgtgaagattctcaacaatacagaaggagacgggaaagagttcattagcgaagtgggaat 8979389  T
Q  222 tatgggaaaaattcatcatttcaatgttgttcg 254  Q
    |||||||||||| || ||  |||||||||||||    
T  8979388 tatgggaaaaatccaccacatcaatgttgttcg 8979356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 8862188 - 8862094
Alignment:
Q  22 gaggattatagagcaatgaaaccaacaagatttacttatgctgatattaaaagaataacaaatggttttaaggaaaatttaggagaaggagctca 116  Q
    ||||||||| |||||   ||||| || |||||| ||||||| ||||| |||||||| ||||| || || ||||||||  ||||||||||||||||    
T  8862188 gaggattatcgagcacaaaaacctactagattttcttatgccgatataaaaagaattacaaacgggttcaaggaaaagctaggagaaggagctca 8862094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 8962159 - 8962253
Alignment:
Q  157 gttgctgtgaaggtgctcaatgagacacaaggagatggaaacgatttcatcaatgaagtccgaactatgggaaaaattcatcatttcaatgttgt 251  Q
    |||||||||||| |||| ||| | ||| |||||||||| |  || ||||| ||||||||  |||||||||||||||| |||||| | ||||||||    
T  8962159 gttgctgtgaagatgcttaataatacagaaggagatgggagagagttcataaatgaagtaggaactatgggaaaaatccatcatgttaatgttgt 8962253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 254
Target Start/End: Original strand, 8926798 - 8926903
Alignment:
Q  149 aaattttggttgctgtgaaggtgctcaatgagacacaaggagatggaaacgatttcatcaatgaagtccgaactatgggaaaaattcatcatttcaatgt 248  Q
    ||||| |||||||||||||| |||| | | | ||| | |||||||| |  || ||||| ||||| ||  |||||||||||||||| |||||| | |||||    
T  8926798 aaattatggttgctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgt 8926897  T
Q  249 tgttcg 254  Q
    ||||||    
T  8926898 tgttcg 8926903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 8939277 - 8939326
Alignment:
Q  202 ttcatcaatgaagtccgaactatgggaaaaattcatcatttcaatgttgt 251  Q
    ||||| ||||||||  ||||||||||||||||||||||| | ||||||||    
T  8939277 ttcataaatgaagtgggaactatgggaaaaattcatcatgttaatgttgt 8939326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 9125739 - 9125654
Alignment:
Q  49 agatttacttatgctgatattaaaagaataacaaatggttttaaggaaaatttaggagaaggagctcatggagccgtattcaaagg 134  Q
    |||||| | ||| ||||||| |||||||| || | ||| ||||||||||| |||||||||||||| || ||| |||| || |||||    
T  9125739 agattttcatattctgatataaaaagaatcactagtgggtttaaggaaaagttaggagaaggagcacacggaaccgtgtttaaagg 9125654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 9466956 - 9466892
Alignment:
Q  187 ggagatggaaacgatttcatcaatgaagtccgaactatgggaaaaattcatcatttcaatgttgt 251  Q
    |||||||| || || ||||| ||||||||  |||||||||||||||| |||||| | ||||||||    
T  9466956 ggagatggtaaggagttcataaatgaagtgggaactatgggaaaaatccatcatcttaatgttgt 9466892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University